Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq140 93.3 4e-14 >seq140 Length=1272624 Score = 93.3 bits (102), Expect = 4e-14 Identities = 202/295 (68%), Gaps = 17/295 (6%) Strand=Plus/Minus Query 20808 TGGGGGTCGTAGCCCTCGA-GACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 ||||||||||| |||| || ||| || ||| || | | || | || || || ||| Sbjct 1078494 TGGGGGTCGTATCCCTTGACGACAAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 1078438 Query 20866 CCTTT----CTCAAAATCTTCAGCCGCGGAAACGGACGCGGGGTCCTC-CGC---AGCTG 20917 || || | | ||||| |||| || ||||| ||||| ||| ||| ||||| Sbjct 1078437 CCCTTTTCCCGCGCAATCTCCAGCTCGGGGAACGGCCGCGG----CTCGCGCTCGAGCTG 1078382 Query 20918 AAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAA 20977 | |||||| || | ||||| | |||| ||||| ||||| |||| | ||| | Sbjct 1078381 TGTCTGCAGGGCCTCGATGTGGTCGATGTAGACGTGCGCGTCTCCCATGACGTGGGTGAG 1078322 Query 20978 GTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGC 21037 | ||||| ||| | ||||| |||| || | ||| || || |||||||| || Sbjct 1078321 GCTCCCCGGCACCAGATCGCACACGTGGGCGAGCATGTGCGTGAGCAGCGCGTAGCTCGC 1078262 Query 21038 GATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| ||||| ||||||||| ||||| |||||| ||||||||| Sbjct 1078261 AATGTTGAAGGGGATGCCGAGCCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 1078207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775129342160