Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq86 107 1e-18 >seq86 Length=1711676 Score = 107 bits (118), Expect = 1e-18 Identities = 280/424 (66%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 || ||| | |||||||| ||||| || ||| || | || || | ||||| |||| Sbjct 1358218 CGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATC 1358277 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| || |||||||| || || | |||||||||||| | || Sbjct 1358278 TTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCT 1358337 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| ||||| ||| |||||||| || ||||| || || | || Sbjct 1358338 CGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCACCTG----AAGAA 1358393 Query 22921 CCGTGTC----AGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGC 22976 ||| | | |||| | | | | ||||| | || ||||| ||| ||| || Sbjct 1358394 CCGCGCCAGCAAGGAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGA 1358453 Query 22977 TTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACT 23036 || || ||||| || |||| || || ||||| || |||| | Sbjct 1358454 GTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCA 1358513 Query 23037 GTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAA 23096 |||||| |||||||||| || |||||||| | |||||| || ||| ||| |||| || Sbjct 1358514 GTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCGGCAATGAGAAGGTGTACAA 1358573 Query 23097 CGTTG-CCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCT 23155 || | |||| || ||||| || ||||| |||||| | | | || || || ||||||| Sbjct 1358574 -GTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCT 1358632 Query 23156 TTGA 23159 | || Sbjct 1358633 TCGA 1358636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232874953301