Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq86 152 7e-32 >seq86 Length=1711676 Score = 152 bits (168), Expect = 7e-32 Identities = 365/546 (67%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||||||||| | | || || ||||||||||| || || |||||||| || || Sbjct 1358355 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1358296 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 1358295 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGC 1358236 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC-TGTCATGTATCCACTTTTGA-- 50148 |||||||||||| || | || || | || | | |||| || ||||| | || Sbjct 1358235 GGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCA---TCGAAT 1358179 Query 50149 -GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207 ||||| ||||||||||| | ||||| || || || ||||| || ||||| ||||| Sbjct 1358178 CGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTT 1358119 Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267 | | || || | ||||| ||||| | || ||| | || || || || Sbjct 1358118 GCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGAT 1358059 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 ||| || || ||||| || |||||||| || | |||||||| |||||| || || Sbjct 1358058 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCC 1357999 Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 | || || || | | || || || || || ||||| ||| || || || |||| Sbjct 1357998 GCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAG 1357939 Query 50388 TACATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAATCATTGATATC 50444 | || || || | || |||| | | | | || ||||| || | | || Sbjct 1357938 GATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTC 1357879 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 || || | || | ||||| | ||||| || || ||||| |||||||| ||||| | Sbjct 1357878 CTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTG 1357819 Query 50505 CCAGAT 50510 |||||| Sbjct 1357818 CCAGAT 1357813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267300613880