Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq86 125 1e-23 >seq86 Length=1711676 Score = 125 bits (138), Expect = 1e-23 Identities = 359/547 (66%), Gaps = 14/547 (3%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | ||||||||||| || || |||||||| || || Sbjct 1358355 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1358296 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 1358295 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGC 1358236 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCAC-TGTCATGTATCCACTTTTGA-- 42253 |||||||||| || | || || | || | | |||| || ||||| | || Sbjct 1358235 GGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCA---TCGAAT 1358179 Query 42254 -GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 ||||| ||||||||||| | ||||| || || || ||||| || ||||| ||||| Sbjct 1358178 CGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTT 1358119 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 | | || || | || || ||||| | || ||| | || || || || Sbjct 1358118 GCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGAT 1358059 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 ||| || || ||||| || |||||||| || | ||||||| || ||| || || Sbjct 1358058 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCC 1357999 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | || || || | | || ||||| || || ||||| ||| || || || |||| Sbjct 1357998 GCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAG 1357939 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATAT 42548 | || || || || || |||| | ||| | || ||||| || | | | Sbjct 1357938 GATGTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGT 1357880 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | || || | || | ||||| | ||||| || || || || |||||||| ||||| | Sbjct 1357879 CCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTT 1357820 Query 42609 TCCAGAT 42615 |||||| Sbjct 1357819 GCCAGAT 1357813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137798996920