Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq86 280 2e-70 seq138 163 4e-35 >seq86 Length=1711676 Score = 280 bits (310), Expect = 2e-70 Identities = 581/854 (68%), Gaps = 43/854 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||||||| | || ||| Sbjct 1357813 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 1357872 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||||||| |||| ||| | | || ||| || ||| ||||| || || Sbjct 1357873 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 1357928 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| |||||||||| |||| ||| || || || |||||||| || ||| | Sbjct 1357929 CTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGA 1357988 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | ||||| |||| ||| ||||| ||||| ||||| |||| Sbjct 1357989 GCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGC-TCGCTGCTTCTACGGCTTCCAGATCA 1358047 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | |||||| || || |||| ||||| || | Sbjct 1358048 TGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTACATCAAGGAGC 1358107 Query 125314 CG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || || || || ||||| ||||| || || || | || | || || || | Sbjct 1358108 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 1358164 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| |||||| |||||| | ||| | || || || | ||| | | || | Sbjct 1358165 AGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGCCTCG 1358224 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || ||||| || |||||||||||||| ||| ||||| ||||||| |||| Sbjct 1358225 TTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 1358284 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| ||||| |||||| | || ||||| |||| Sbjct 1358285 TCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 1358344 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609 |||| || ||| ||||||||| || ||| ||| || || | || | Sbjct 1358345 AGGGTCTGCACACGGACTTTGCCTGCCTGCTG------CACTCTC----ACCTGAAGAAC 1358394 Query 125610 AGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||||| | | |||| || |||| | ||||| ||||| | || || || Sbjct 1358395 CGCGCCAGCAAGG---AGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAG 1358451 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 |||||| | ||||| | || || | | || | |||||||||| ||| || ||| Sbjct 1358452 GAGTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAG 1358511 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAGA 125781 ||||||| |||||||| || || || || ||| |||| | ||| ||| Sbjct 1358512 CAGTACATTGAGTTTGTTGCCGACCGCCTGCTG-----GTTGCCCTCGGCAATGAGAAGG 1358566 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 | ||||| | || |||||||| || ||| | ||| || || | || ||||||| Sbjct 1358567 TGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCA 1358626 Query 125842 ACTTTTTCGAGAAG 125855 |||| ||||||||| Sbjct 1358627 ACTTCTTCGAGAAG 1358640 >seq138 Length=1076999 Score = 163 bits (180), Expect = 4e-35 Identities = 353/518 (68%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| ||| | | || ||||| || | | ||| || || | || Sbjct 836447 ACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCC-CG 836505 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || || || || | ||| ||||| | || || || Sbjct 836506 ATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTCGAGCCCTG 836565 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||| |||||||| | || | ||||| ||| ||| || |||| || Sbjct 836566 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 836625 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AAC 97043 ||| | |||||||| ||| || ||| | || ||| | ||||||||||| ||| | Sbjct 836626 CGCCCGCGACTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAA 836685 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| |||||| || ||||||||| || | || || || | || |||| Sbjct 836686 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTAC 836743 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162 ||||| ||||||||||| |||| |||||| ||||| || ||| |||| Sbjct 836744 GGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGTCGTAAGACC 836803 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | ||| ||| | |||| |||||| | |||| || ||| ||| ||||| || | | Sbjct 836804 ATTCG-TGCTC-AGAAGCTGTGGTACTCCATTCTGGAGGCCCAGACCGAGACCGGTAACC 836861 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| ||||||||||| | || ||||| |||||||| |||||||||||| Sbjct 836862 CCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCA 836921 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| || || ||||| || || | |||||| Sbjct 836922 TCCGCAGCTCTAACCTCTGCACCGAGATCATTGAGTAC 836959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057653038920