Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq140 104 2e-17 >seq140 Length=1272624 Score = 104 bits (114), Expect = 2e-17 Identities = 151/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 ||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | ||| Sbjct 1078411 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 1078352 Query 25448 GACGTGAGCGTCTCCCA-GA-GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 |||||| |||||||||| || ||| || | ||| ||||| | || || |||| Sbjct 1078351 GACGTGCGCGTCTCCCATGACGTG-GGTGAGGCTC-CCCGGCACCAGATCGCACACGTGG 1078294 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | ||||| |||||| || |||||| || ||||| ||||| | |||| ||||||| Sbjct 1078293 GCGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATG 1078234 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACA 25592 || | |||| |||||||||||| || Sbjct 1078233 TCGCAG-GACCGCTGGTAGAGCTGGCA 1078208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136907713691