Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq86 156 5e-33 >seq86 Length=1711676 Score = 156 bits (172), Expect = 5e-33 Identities = 367/547 (67%), Gaps = 14/547 (3%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||||||||| | | || || ||||||||||| || || |||||||| || || Sbjct 1358355 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1358296 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || ||||| || || | || |||||||| || || || || Sbjct 1358295 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGC 1358236 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGTATCCACTTTTGA-- 33492 |||||||||| || | || || | || | | |||| || ||||| | || Sbjct 1358235 GGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCA---TCGAAT 1358179 Query 33493 -GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 ||||| ||||||||||| | ||||| || || || ||||| || ||||| ||||| Sbjct 1358178 CGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTT 1358119 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 | | || || | ||||| ||||| | || ||| | || || || || Sbjct 1358118 GCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGAT 1358059 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 ||| || || ||||| || |||||||| || | |||||||| |||||| || || Sbjct 1358058 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCC 1357999 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 | || || || ||| || || || || || ||||| ||| || || || |||| Sbjct 1357998 GCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAG 1357939 Query 33732 TACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATAT 33787 | || || || || || ||||| | || | | | || ||||| || | | | Sbjct 1357938 GATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGGT 1357880 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | || || | || | ||||| | ||||| || || ||||| |||||||| ||||| | Sbjct 1357879 CCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTT 1357820 Query 33848 TCCAGAT 33854 |||||| Sbjct 1357819 GCCAGAT 1357813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945899597720