Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq138 190 2e-43 seq86 183 3e-41 seq140 125 7e-24 seq162 96.9 3e-15 >seq138 Length=1076999 Score = 190 bits (210), Expect = 2e-43 Identities = 922/1445 (64%), Gaps = 45/1445 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| ||| || | ||| || ||| |||| Sbjct 837570 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 837511 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | ||||| ||||||||||| |||| ||| | || |||||||| || || Sbjct 837510 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACA 837451 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 837450 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 837391 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 || || || ||| | |||||||||||||||||||| | || ||||| | || || | Sbjct 837390 AGGTCGGAG--GGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGGCG 837333 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTC---GCAACTCGCCTCC 145351 | ||||| || || || |||| ||||| | ||| | || || || Sbjct 837332 ATCCCTTG-AACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAA---GCTTCA 837277 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC-TTCATCG-- 145408 || ||| | ||||| |||||| || ||| |||| ||| |||| | ||| Sbjct 837276 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGC----TCGCGAGCCTCGGG 837221 Query 145409 -CTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| | |||| ||||| | || || || || || ||||| | || || || Sbjct 837220 AGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACC 837161 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||||| | | ||| || || || || | || || Sbjct 837160 GATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACGGGGTAGTGGTTCACATC 837101 Query 145528 GATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC 145587 ||| || || | ||| || || || ||||| || | | | | ||| | ||||| Sbjct 837100 GATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTC 837041 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | | |||||| | | ||| || | ||| | || ||||| || || || Sbjct 837040 GTAGCAGCCCTCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGAC 836981 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTT 145704 || ||| |||| | | | ||| | | |||||||| ||| | || ||| | Sbjct 836980 GGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGC---G 836924 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764 |||||| |||| || | ||| || || || | |||||| |||||||||||||||| | Sbjct 836923 GATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAA 836864 Query 145765 CGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCAC 145824 || || ||||| ||| | ||||| || | || | ||| ||||| | Sbjct 836863 GGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAGCTTCTGAGCACGAAT 836804 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 || | || ||||| ||||| || ||| || |||||||| | || Sbjct 836803 GGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCC 836744 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||||| || | ||||| || || | |||||| ||||| |||| ||| | ||| Sbjct 836743 GTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTT 836684 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | ||| |||| ||| || | ||| || | |||||| || | ||||||||| || Sbjct 836683 CTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGC--- 836627 Query 146005 GCAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || | |||| | || || ||| || | || ||| | | ||| ||| |||| Sbjct 836626 GCGAACCTCCTCCTTGCCGTGGTTCTTGC-GGAGATCAAGGAAGTCAAAGACGTCGGCGT 836568 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGT 146117 |||| || || | |||| ||||| ||| || || |||||||||||||| |||| Sbjct 836567 GCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGT 836508 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||||||| ||||| |||| |||||| | |||| ||| |||||| | Sbjct 836507 ATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 836448 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-G 146236 | | || || ||| || || | || || || |||| |||| ||| || | Sbjct 836447 TGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAAACCGATACCACCAG 836388 Query 146237 CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295 || | |||||| || ||| || ||| | || || || ||||| || |||||||| || Sbjct 836387 CCAT-CTTGGAGATCATGGCACACGTCTTC-AGAGTGTCATAGATACCCTCAATGCTGTC 836330 Query 146296 --GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 |||| ||| | | || ||||| ||| ||| ||| || ||| || || || | Sbjct 836329 ATCCTTC--ATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTG 836272 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | || ||| ||||| || || | || | | ||| | | || || |||| Sbjct 836271 AAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGG 836212 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 | | ||||||||| || ||||| | || || ||||||| |||||| || ||| Sbjct 836211 ACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGC 836152 Query 146474 CGCTC 146478 ||||| Sbjct 836151 CGCTC 836147 >seq86 Length=1711676 Score = 183 bits (202), Expect = 3e-41 Identities = 358/521 (69%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| ||||||||||||| |||||| | || | | || Sbjct 1358146 ATTCCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAACTCG 1358205 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | || ||| |||| | || |||||||| ||| |||||| |||| || || Sbjct 1358206 TCCTTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCC 1358265 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 |||||| ||||||| | |||| || | ||| | |||||||||||||||| ||| ||| Sbjct 1358266 TTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTGACCTTTTCCAA 1358324 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321 |||||| || || || |||||||| ||||| ||||||||||| || || || | || Sbjct 1358325 CGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGC----ACT 1358380 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA------GCATGTTCAAGGAGG 46375 ||| | || | || ||||| | || | | ||| ||| ||| || | Sbjct 1358381 CTCACCTGAAGAAC-----CGCGCCAG-CAAGGAGGTGATTCGTGACATCATCACCGACG 1358434 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || ||| ||| |||||||||| || | || ||||| |||||||||||||||| Sbjct 1358435 CCGTCCGCATCGAGCAGGAGTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGA 1358494 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC 46495 || | | ||| | ||||| |||||||| || ||||| ||||| || || Sbjct 1358495 ACTCCAACCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCG 1358554 Query 46496 ACCAGCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 | | |||| | | || | || ||| || ||||| |||||| | ||||| |||||| Sbjct 1358555 GCAATGAGAAG-GTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTG 1358613 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||||| || || || ||||| |||||||||| ||| || Sbjct 1358614 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 1358654 >seq140 Length=1272624 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||| || |||||||| |||||| Sbjct 72845 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 72904 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | |||||||||||||| ||| Sbjct 72905 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 72964 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 72965 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 73024 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 73025 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 73071 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||| ||||||||||| |||||| Sbjct 762788 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 762847 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || ||| | || | ||||||||||| ||||| Sbjct 762848 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGGA 762907 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | |||||| | ||||||| Sbjct 762908 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCGACC 762967 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || |||||||||||||| Sbjct 762968 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | || |||||||| ||||||||||| ||| Sbjct 763016 CCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAG 763075 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | ||||||||||||||||||| Sbjct 763076 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 763135 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||| | Sbjct 763136 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 763195 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | || || ||||| || || || |||| Sbjct 763196 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 763232 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| Sbjct 763302 CCACCACGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 763361 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 763362 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 763421 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| ||||||| Sbjct 763422 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 763481 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| || || || ||||| |||||||||| Sbjct 763482 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGA 763530 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||| || |||||||| ||||| Sbjct 762559 GCCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 762618 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||| || |||||||| || || | || || ||||||||||| || || Sbjct 762619 CAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGG 762678 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | ||||| | || || | Sbjct 762679 GATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTATCAGATGATTCCAC 762738 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || || || || || |||||||| Sbjct 762739 TTCCAGGGTAATCGTCTTACCCGTCAGTGTCTTGACAAAGATCTGCAT 762786 >seq162 Length=142150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| || ||||| |||||||| || ||| ||| Sbjct 93819 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 93760 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 93759 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93700 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 93699 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 93640 Query 131225 A 131225 | Sbjct 93639 A 93639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011814673280