Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq35 127 4e-24 seq86 118 2e-21 seq138 100 6e-16 >seq35 Length=1408159 Score = 127 bits (140), Expect = 4e-24 Identities = 437/672 (65%), Gaps = 17/672 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| || | Sbjct 388328 GTCGGCTCTCTTTCTGGTGGTTGGAAGATGAAGCTTGCCCTGGCCCGAGCCATGCTCAAG 388269 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| ||||| || || || || |||||| ||||| ||||| | ||| Sbjct 388268 GGTGCCGATGTCCTCCTGCTGGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 388209 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| | |||| | | || | || || || || |||| Sbjct 388208 TGGCTGGAGAACTACCT--CAAGTCGCACCCCGACATTACCAGTCTGATCGTGTCCCACG 388151 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 ||||||| ||||| || ||| | | | ||| ||||| |||| || ||||| Sbjct 388150 ACTCTGGATTCCTGGACAACGTCACCACCGACATTTACCACTACGAGCCCAACAAGAAGC 388091 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGC 279991 || | ||| ||||||||| | || ||||| ||| |||||| ||||| Sbjct 388090 TCGCTTGCTACAAGGGCAACCTGGCCGCCTTCGT--CAAGGTGCGCCCCGAGGCCAAGAG 388033 Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 |||||| || | ||| | | ||| | |||||| || || | || Sbjct 388032 CTACTACACTCTTTCCGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCGGGTATCCTCAC 387973 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || |||| || || ||| || ||||| | | ||| |||||| | | ||| Sbjct 387972 CGGTATCAAGTCGCAGACTCGTGCCATCATTCGCATGTCC--AACGTCTCGTACACCTAT 387915 Query 280110 CCCAATGGCCCCAA-CAT---CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACG 280165 ||| | |||| | | || || || ||| || | || || ||| || Sbjct 387914 CCCGGGGCTTCCAAGCCTTCACTCCACGAG-GTCTCCTGCTCTCTCTCGCTGTCCTCGCG 387856 Query 280166 GATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGG 280225 | | | ||||||||||| |||||||| ||||||||||| ||||| | || || || Sbjct 387855 AGTGGCCATTATTGGACCCAACGGTGCGGGCAAGTCTACCCTGATCAAGCTGCTCACCGG 387796 Query 280226 CGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGT 280285 ||||||| |||| || ||| |||||| |||||| | || || | ||| | Sbjct 387795 CGAGACCATCCCCACCACTGGCAAGGTTGAGAAGCACCCCAACCTCCGAATCGGCTACAT 387736 Query 280286 CGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 | ||||| || | | ||| |||||| |||||||| | |||||| ||||| || | Sbjct 387735 CAAGCAGCATGCCCTGGAGCACGTCGAGATGCACCTGGAGAAGACTCCCAACCAGTATCT 387676 Query 280346 TCAGTGGCGCTA 280357 |||||||| || Sbjct 387675 GCAGTGGCGATA 387664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || || |||||||||||| | | | ||| ||| || ||| ||||| |||||| Sbjct 387267 CTTGGCCTGGACCCCGAGATCGCCAACCACAACGAGATTGGCTCTCTGTCTGGTGGCCAG 387208 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| ||||||| | | || ||||| | |||| ||| || | ||||| ||| Sbjct 387207 AAGGTCAAGGTTGTCATTGCCGGCGCCATGTGGAACAACCCCCACTTGCTGGTTCTGGAC 387148 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 ||||||||||||| ||||||| || |||||||| |||| Sbjct 387147 GAGCCTACCAACTTCTTGGACCGAGACTCCCTGGGCGGTCTG 387106 >seq86 Length=1711676 Score = 118 bits (130), Expect = 2e-21 Identities = 382/589 (65%), Gaps = 23/589 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| || || |||||| ||||| |||||||| | Sbjct 1358636 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAC 1358577 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| || ||| || || || | | |||||| || |||||||| | Sbjct 1358576 GACTTGTACACCTTCTCATTGCCGAGGGCAACCAGCAGGCGGTCGGCAACAAACTCAATG 1358517 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || ||||| | ||||| | Sbjct 1358516 TACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAAGGCAGAGCCTCGGTCAAA 1358457 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797 || |||| ||| || || || || | || | |||||| ||| | | Sbjct 1358456 AACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCTTGCTGGCG 1358397 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||||| ||| | |||| ||| || | |||| | |||||||||||||| Sbjct 1358396 CG-----GTTCTTCAGGTGAGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGT 1358342 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| ||||| ||||||||| | |||||| ||||| | || || ||| |||||| Sbjct 1358341 CACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCC 1358282 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | | ||||| || ||| | | ||||||||| | | ||||| | Sbjct 1358281 AGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGCGGCAAAGGCAACGA 1358222 Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGC 252029 |||||| ||||| || ||||||||| | | ||| || ||||| | || Sbjct 1358221 GGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAA--TC---GCCCAGTCGGC 1358167 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| | || || || || || || || | ||||| |||| |||| | | Sbjct 1358166 CTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTG 1358107 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| |||| | || | || || |||||| |||| || |||||| Sbjct 1358106 CTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATG 1358058 >seq138 Length=1076999 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 873743 GGTGAGGATCTCTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 873684 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | |||||||||| | || || |||||| ||||||||| || | Sbjct 873683 CAAACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 873624 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | || || || ||||| ||| Sbjct 873623 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTTGAGGGCTTCCCTAA-GCA 873565 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | ||||| Sbjct 873564 GAGCGAAGTCAAGACCGTCTTCGTTGAGCACGACCTTGACTC 873523 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | |||||||| ||||| | | ||||| ||||| || ||||| ||||| | Sbjct 872371 CCAACTTCGGTCTGGATGCCGAGCTGGTTTCCCACTCCCGCATGCGTGGTCTGTCTGGTG 872312 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| | | || |||| |||||| | || ||| ||||||| Sbjct 872311 GCCAGCGTGTCAAGACTGTCCTGGCTGCTTGCTC-GTGGCAGCGACCCCACTTGATCGTC 872253 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || ||||||||||||||||| |||| || || ||||| || ||| Sbjct 872252 CTTGACGAGCCTACCAACTACTTGGATCGTGACTCTCTGGGTGCCCTG 872205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834600750447