Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq140 183 6e-41 seq86 176 8e-39 seq138 113 8e-20 seq35 96.9 6e-15 >seq140 Length=1272624 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || || ||||| || |||||||| || |||||| Sbjct 763302 CCACCACGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 763361 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 763362 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 763421 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 763422 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 763481 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || ||||||||||||||||| |||||||| ||| Sbjct 763482 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATG 763532 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||| ||| || |||||||| || ||| Sbjct 72845 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 72904 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || || Sbjct 72905 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 72964 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 72965 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 73024 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 73025 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 73071 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||| ||| || || ||||| || ||| Sbjct 762788 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 762847 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 762848 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGGA 762907 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| ||||| || || | ||| || || Sbjct 762908 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCGACC 762967 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 762968 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || ||||| || || ||||| || |||||| Sbjct 763016 CCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAG 763075 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 763076 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 763135 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 763136 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 763195 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||| || || || || ||||||||||||| Sbjct 763196 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 763232 >seq86 Length=1711676 Score = 176 bits (194), Expect = 8e-39 Identities = 568/869 (65%), Gaps = 27/869 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || |||||||||||||| |||||| Sbjct 1358675 TTCATGACACCGGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCG 1358616 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC--AAACTGCTTGGGGT 10050 | ||||||||| |||||| ||||||||||||| | | || | || ||| | Sbjct 1358615 CCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGT--TGGACGACTTGTACACCTTCTCAT 1358558 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110 ||||| || | | |||||| || || ||||| |||||||| |||| |||| | Sbjct 1358557 TGCCGAGGGCAACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATGAGGTTGG 1358498 Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCG--CAAATGAAGTCCTTTTCGTTGGC 10168 |||||||||| | || | ||| || | || ||| |||| || |||| ||| || Sbjct 1358497 AGTTCATGCCCAGCAGGGCGCAAGGCAGAGCCTCGGTCAAA--AACTCCTGCTCGATGCG 1358440 Query 10169 GACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTC 10226 ||| || || || |||| | ||| || | | | || ||||| || | Sbjct 1358439 GACGGCGTCGGTGATGATGTCACGAATCACCTCCTTGCTGGC-GC-GGTTCTTCAGGTGA 1358382 Query 10227 GAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 || | ||| || |||| | | ||| || |||||||| || ||||| ||||||| Sbjct 1358381 GAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTG 1358322 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || ||| ||||||||||| || || || |||||||| |||| | || | Sbjct 1358321 GAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCA 1358262 Query 10347 CCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-G 10403 ||| || |||||| ||||| || | |||| |||||||||| || ||||| | Sbjct 1358261 CCGCTGA--AGAAGATGCCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGACG 1358204 Query 10404 CGGTCGCGCGAAAAGTATTTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCG 10461 | || | | |||| ||||| | |||||||| | | | ||| || | Sbjct 1358203 AGTTCTTGTCCTGGATCCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGG 1358144 Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521 |||| || || | |||||| | ||| |||| | | | |||| || || || | || Sbjct 1358143 TCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGA 1358084 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATAC 10581 |||||||||| |||| ||||| | |||| | |||| | ||||||| | Sbjct 1358083 GCAGGGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGC 1358024 Query 10582 GTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGC 10641 | ||| ||| | ||| || || ||| | | ||||||||| | || |||| Sbjct 1358023 GAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGC 1357964 Query 10642 CATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA 10701 | || | | || |||||| | |||||||| |||||||| ||| |||||||||| Sbjct 1357963 CGTCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCA 1357904 Query 10702 ----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAG 10757 ||| || |||||| || |||| | || | | ||| || |||||||| Sbjct 1357903 GGCGGTTGTT----CCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAG 1357848 Query 10758 AAAGTGGCAACGGCCTTCTTGTACATCTG 10786 || | || ||||||| |||||||| || Sbjct 1357847 AAGGAAGCCTCGGCCTTTTTGTACATTTG 1357819 >seq138 Length=1076999 Score = 113 bits (124), Expect = 8e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||||||||| | ||| | || || ||||| | || ||| |||||| | ||| Sbjct 873571 GGGAAGCCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTGCCGGAACCG 873630 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||||||| ||| |||||| | | || ||||||| | |||| | || ||| || Sbjct 873631 TTGGGACCGCAGAGACCGTAACGCTGACCACGCTTGAGGCGGAGGTGGGTTTGGTTGAGC 873690 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 ||||||||| |||| |||||||| ||||| ||| | ||| || ||||||||||||||| Sbjct 873691 AGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAGAGATCCTCACCCTCCTCG 873750 >seq35 Length=1408159 Score = 96.9 bits (106), Expect = 6e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||||||||| || | ||| | | || | | |||| Sbjct 388134 GTCCAGGAATCCAGAGTCGTGGGACACGATCA--GACTGGTAATGTCGGGGTGCGACTTG 388191 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | ||||| || | |||| ||||||| |||||| |||||||||||||| Sbjct 388192 AGGTAGTTCTCCAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCCAGC 388251 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || |||| || ||| | |||| ||||| || | || | |||||||| ||||| || Sbjct 388252 AGGAGGACATCGGCACCCTTGAGCATGGCTCGGGCCAGGGCAAGCTTCATCTTCCAACCA 388311 Query 225623 CCGGACAGGGAGCCGA 225638 || || || ||||||| Sbjct 388312 CCAGAAAGAGAGCCGA 388327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||||| ||| | |||||||| |||| | || | | Sbjct 387664 TATCGCCACTGCAGATACTGGTTGGGAGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 387723 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 |||||||| | ||| | || || | |||||| |||||| || ||| || Sbjct 387724 GCATGCTGCTTGATGTAGCCGATTCGGAGGTTGGGGTGCTTCTCAACCTTGCCAGTGGTG 387783 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | |||||| || |||| |||||||||||| ||||| ||| Sbjct 387784 GGGATGGTCTCGCCGGTGAGCAGCTTGATCAGGGTAGACTTGCCCGCACCGTTGGGTCCA 387843 Query 225158 AT 225159 || Sbjct 387844 AT 387845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620476113240