Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq140 114 1e-20 >seq140 Length=1272624 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | ||||| || || || |||||||| ||| Sbjct 763299 ATACCACCACGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 763358 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || |||||| ||||||||||||| ||||| || Sbjct 763359 GAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGG 763418 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | |||||||| || ||| Sbjct 763419 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCG 763478 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||| || || || || || ||||||||| Sbjct 763479 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 763529 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||||||| ||| || ||||| || || ||||||||| | Sbjct 762824 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 762883 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| ||||| |||||||| || || ||||| |||||| || | | Sbjct 762884 ATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 762943 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | || || | || ||||| |||| ||| | || || || || || || || || Sbjct 762944 TCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 763003 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 763004 AAAATCTGCAT 763014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| ||| | || || || ||||| || || ||| Sbjct 763046 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCA 763105 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 763106 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 763165 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | || | ||| ||||||||||| || Sbjct 763166 ACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTC 763225 Query 114366 TTTAC 114370 || || Sbjct 763226 TTGAC 763230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || || ||| || || || || || || || Sbjct 72881 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 72940 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| |||||||| || ||||| || ||||| ||||| || | | Sbjct 72941 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 73000 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| || || || || | ||| | ||| || || || || || || || Sbjct 73001 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACG 73060 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 73061 AAAATCTGCAT 73071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133544895204