Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq138 471 8e-128 seq86 457 2e-123 >seq138 Length=1076999 Score = 471 bits (522), Expect = 8e-128 Identities = 1242/1878 (66%), Gaps = 71/1878 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || || | ||||||| ||| | ||||||||||||||||||||| Sbjct 837912 ACGGTGAACTGGATAGGCGCAGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTG 837853 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || || ||||||| || | ||| |||| || | Sbjct 837852 AGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATCGTGGG------- 837800 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||||||||||||| |||||||| ||| | | || || Sbjct 837799 --GTCCTT---CATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCA 837745 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| | | |||||||| | || |||| Sbjct 837744 GCCGCCATCTGGACAATTTGACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTG 837685 Query 243977 AGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 | || |||||||| || | |||||||| | ||||| || | | | |||| || Sbjct 837684 ATGTCCTCGGGGATG--TTGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGT 837627 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTG 244090 | |||| ||| ||||||||| | |||| ||| || ||||| | Sbjct 837626 TCTTCATGGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG---- 837571 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | || || || |||||||||| |||| || ||| Sbjct 837570 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 837511 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || || |||||||||| ||||| | || || ||||| ||||| || | || Sbjct 837510 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACA 837451 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 |||| ||||| | || |||||| || ||| | |||| || ||| |||||| Sbjct 837450 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 837391 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCT 244329 | | | ||| | | ||| | |||||||||| |||| || | |||| | | Sbjct 837390 AGGTCGGAGGGCT---------TGACGTCCCACATGTCGTACTGGAGGATACCCTCAGAT 837340 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 | || | | |||| | | | ||||| || ||| || ||| | || | | Sbjct 837339 GCAGGCGAT-CCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGC 837281 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 || |||||||| | ||| ||||||||||||||| |||||||| ||||| |||| | Sbjct 837280 TTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGG 837221 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 | ||||| | | || | ||| |||| || || ||||| || |||| || Sbjct 837220 AGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACC 837161 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||| |||| ||| ||| ||||| | || | || | || |||||||| ||| | | Sbjct 837160 GATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACGGGGTAGTGGTTCACAT 837102 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | ||||||||||||| || || | ||| ||| ||| || |||| Sbjct 837101 CGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGT 837042 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 |||| | || ||||| | | || | ||||| || ||||| | || Sbjct 837041 CGTA---GCAGC---CCTCGTTG-TAGTCA-----ACAAAGGCGGGAAGGGCCAGAGAGG 836994 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 ||| |||||||||||| ||||| || | | ||||| | |||||||||||||||| Sbjct 836993 CCAAGTTGCAGACGGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGT 836934 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 || || ||||||||||| || || || ||| |||| ||||||| |||||||| Sbjct 836933 TAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGT 836874 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 ||||||||||||| ||||||||| |||||| | || | | || ||| || | | Sbjct 836873 AGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAGCTTCT 836814 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 ||| | ||| | ||| | ||||| |||||| |||||| ||||| | Sbjct 836813 GAGCACGAATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAA 836754 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCA 244986 |||| ||| || || | ||||| ||||| || | ||||||||||| |||| Sbjct 836753 ACTCCTCGCCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATGAGCGTCCA 836696 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || | | || ||| | || ||||||||| ||||||||||| || || |||| | Sbjct 836695 GTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAA 836636 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | || | ||| ||| ||| |||||| | || || | ||||||||||| Sbjct 836635 GTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGAC 836576 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 |||| ||||||||||||| | ||||| |||| ||| || || ||||||||||| ||||| Sbjct 836575 GTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTG 836516 Query 245167 GTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||| | | | ||| || |||||||| ||||| | || | |||||||| | Sbjct 836515 GTCGA----CGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGG 836460 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 || |||||||||||| |||||||| ||| || | | || | | || | || | Sbjct 836459 AGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAAAC 836400 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || || || ||||||||| | ||| || |||| | ||||| || |||| Sbjct 836399 CGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCCT 836340 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTG 245401 | |||||||| |||||||| | || ||||| |||||||||| ||||||| ||| | Sbjct 836339 CAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCT-GGGCTTGCGGGGTA 836281 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTAC 245461 | | ||||| || || ||| ||||||||| ||| | ||| || | || ||| Sbjct 836280 CCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTAT 836221 Query 245462 GTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGT 245520 |||| ||| | | || |||| ||| || ||| | ||| ||| | ||||| | Sbjct 836220 GTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGC-CACTCGCATGATCAT 836162 Query 245521 GTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAG 245577 |||||| ||| |||| || || ||| | ||| || | ||| || ||||| || Sbjct 836161 GTGCTGTGGCCGCTCGACAATCTTGCCGTCGAG---CTTCAGAAGGTATGATCGCTCCAG 836105 Query 245578 CGTCTTGAACCCAAAGTA 245595 ||||||||| |||||||| Sbjct 836104 CGTCTTGAAGCCAAAGTA 836087 >seq86 Length=1711676 Score = 457 bits (506), Expect = 2e-123 Identities = 624/857 (73%), Gaps = 22/857 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| |||||||||||| |||||||||||| Sbjct 1357813 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 1357872 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 1357873 TCCAAGGACCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 1357931 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| |||||||||||||||||||| |||||||| ||||| |||||||||| | | Sbjct 1357932 TCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 1357991 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||| ||||||||||||||||||||||| || Sbjct 1357992 CTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1358051 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| || ||||||| |||| |||||| ||| | Sbjct 1358052 GGAGAACATCCACTCCGAGACGTACTCC---CTGCTCATCGACACTTACATCAAGGAGCA 1358108 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| ||| || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 1358109 CAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 1358168 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAG 42711 ||||||||| | |||||| || | | || | | | || | | || | || || | Sbjct 1358169 CGACTGGGCGATTCGATGGATCCAG-GACAAGAACTCGTCCTTTGCCCAGCGCCTCGTTG 1358227 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||| Sbjct 1358228 CCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 1358287 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || |||||||| || ||||| || ||||| |||||| | |||||| Sbjct 1358288 AGAAGCGAGGTCTC-ATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 1358346 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | ||||||||||||||| ||| ||| ||||| | | || || Sbjct 1358347 GGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC---TCACCTGAAGAACCGCGCCAGC 1358403 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| | | || | ||||||||| || ||||| |||||| ||||||| | || Sbjct 1358404 AAGGAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACC 1358463 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | ||||| ||||| | ||||||||| | |||||||| ||||||| || Sbjct 1358464 GAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAG 1358523 Query 43011 TACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGT 43068 | || ||||||| || ||| |||| || | || | | ||||| || | Sbjct 1358524 TTTGTTGCCGACCGCCTGCTGGTTGCC-CTCGGCAATGAGAAG-GTGTACAAGTCGTCCA 1358581 Query 43069 GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGC 43128 |||||| ||||||||||||||||| || ||| |||||||||||||| |||||||||| Sbjct 1358582 ACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGC 1358641 Query 43129 GCGTCGCCGACTACCAG 43145 ||||||||||||||||| Sbjct 1358642 GCGTCGCCGACTACCAG 1358658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337228691920