Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq140 96.9 3e-15 >seq140 Length=1272624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| ||||| || || |||||||||||||| |||||||| || || Sbjct 72844 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 72902 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || || | |||||||||||||| |||||||||||||| ||| | Sbjct 72903 TCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGG 72962 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 72963 GGATGCCCTCCTTGTCC 72979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || ||||| || || |||||||||||||| |||||||| || || | || || Sbjct 762569 AGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTACG 762627 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| ||||| || ||||| |||| ||||||||| || ||| | | ||| Sbjct 762628 ACCGTCTTCCAGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGGGATACCCTC 762687 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||| | | | |||||| ||||| ||| | || Sbjct 762688 CTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTATCAGATGATTCCACTTCCAGGGT 762747 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || ||||| || |||||||| ||||| Sbjct 762748 AATCGTCTTACCCGTCAGTGTCTTGACAAAGATCTGCAT 762786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061591853934