Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq140 105 7e-18 >seq140 Length=1272624 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || || | || || || || ||||||||||| || | Sbjct 763015 ACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGA 763074 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| |||||||||||||| ||| | ||||| ||||||||||| ||||| Sbjct 763075 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 763134 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || ||| || || || Sbjct 763135 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 763194 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 || | ||| | ||||||||||||| || || |||| Sbjct 763195 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 763232 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | || ||| || | || Sbjct 763317 AGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 763376 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || | ||||| ||||||||||| || ||||| || || || || Sbjct 763377 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 763436 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 763437 TGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 763496 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| || ||||| Sbjct 763497 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 763528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | ||||| ||||||| |||||||| || || || Sbjct 762824 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 762883 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| |||||||| || || || || || || || ||| || Sbjct 762884 ATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 762943 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | |||||| | || || || | || | |||||| || || | || || ||| Sbjct 762944 TCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 763003 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 763004 AAAATCTGCAT 763014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643756991480