Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq138 217 1e-51 seq86 197 1e-45 seq140 113 4e-20 >seq138 Length=1076999 Score = 217 bits (240), Expect = 1e-51 Identities = 744/1141 (65%), Gaps = 33/1141 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || || | || |||| | || | ||| |||| | | Sbjct 837572 GGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 837513 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| ||||| || || |||| || | || || ||||| || | Sbjct 837512 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGA 837453 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | ||| || || | |||||| | || | ||||| | | | ||| |||| Sbjct 837452 CAAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCC 837393 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265 |||| | || || | ||| ||||||||||||||| | | || |||| || || Sbjct 837392 ACAGGTCGGAGGGCTTGACGTCCCACATGTCGTACTGGAGGATAC-CCTCAGATGCAGGC 837334 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 | || || | | ||| ||| ||| | ||| | || | ||| || || Sbjct 837333 GATCCCTTGAACGATTCA-TAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAG 837275 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| ||| ||| ||||| ||| ||| || || || || || || || ||| Sbjct 837274 GGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 837215 Query 153386 GTACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 | |||| ||||| ||| | || ||||| || || ||||||| |||||| ||||| | Sbjct 837214 AAAGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGATAG 837156 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 |||| || | ||||||| | || ||| || | ||| ||||| || |||||| Sbjct 837155 GTCGGTGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGACGGGGTAGTGGTTCACATCGAT 837098 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 || |||||||||||| || ||||| || || | | | ||| |||| ||| || || Sbjct 837097 GATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTA 837038 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | || | | ||| | ||| |||| || |||||||| Sbjct 837037 GCAGCCCTCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGACGGC 836978 Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTTAT 153679 ||| |||| | | | ||||| | |||||||| ||||||||| ||||| || Sbjct 836977 GACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGG---AT 836921 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 | |||||| || | ||| ||||| ||||| ||||| ||| ||| |||||||| | || Sbjct 836920 GGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGG 836861 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799 ||||||||| || | || | || | ||| | ||| || || | Sbjct 836860 GTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAGCTTCTGAGCACGAATGGT 836801 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859 || ||| || ||||| |||||||| |||||||| ||||||||| |||||||| Sbjct 836800 CTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTA 836741 Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916 |||||| || ||||| || || | | || ||||| |||| ||| || | || | Sbjct 836740 GCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTTC 836683 Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976 | ||| || |||||| ||||| || | ||| || || | | |||||| || Sbjct 836682 -TCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGC--- 836627 Query 153977 GCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGT 154032 || | ||||| | || || | | || | |||| || | | | ||| |||||||| Sbjct 836626 GCGAACCTCCTCCTTGCCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGT 836568 Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGT 154089 ||||||| || | ||||| ||| | |||||| |||||| || ||||| ||||||| Sbjct 836567 GCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGT 836508 Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGG 154149 || | | ||||||||||| |||| |||||| | |||| | | ||||||||||| Sbjct 836507 ATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 836448 Query 154150 T 154150 | Sbjct 836447 T 836447 >seq86 Length=1711676 Score = 197 bits (218), Expect = 1e-45 Identities = 510/765 (67%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| |||||||||||| | || || Sbjct 1357906 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGC 1357965 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAA-CTCGAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | |||||| | Sbjct 1357966 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATTCCCGAGGCTCG 1358024 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| |||| ||||| Sbjct 1358025 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCT 1358084 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || | | | | |||||| ||||| || || | || || | || Sbjct 1358085 CATCGA-CA-CTTACATCA-AGGAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 1358141 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| ||||||| ||||| | ||||| || |||||| || | | | Sbjct 1358142 GACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAA 1358201 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | ||| ||||| | || ||||| ||| ||||||||| | || || ||| Sbjct 1358202 CTCGTCCTTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGG 1358261 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | | ||| | |||||||||||||| || Sbjct 1358262 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTC 1358321 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACT- 52557 ||||||| | || || || ||||| || ||||||||||||||||| ||||| || ||| Sbjct 1358322 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC 1358381 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612 || |||| |||| | | || | |||||| ||| ||| ||| Sbjct 1358382 TCACCTGAAGAACCGCGCCAGC-AAGGAGGTGATTCG----------TGA-CATCATCAC 1358429 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || ||||| |||||||||| || | || ||||| || |||||||| Sbjct 1358430 CGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGG 1358489 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | |||| ||||||| |||||||| || || || ||| |||| Sbjct 1358490 CATGAACTCCAACCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGC 1358549 Query 52733 GCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 ||||| | ||| | ||| | ||| || ||||| |||||| | |||||||| Sbjct 1358550 CCTCGGCAATGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTC 1358609 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| ||||||||||| |||| ||| || Sbjct 1358610 CCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 1358654 >seq140 Length=1272624 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || || |||| | | Sbjct 72880 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 72939 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 72940 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 72999 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || || || || Sbjct 73000 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 73059 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 73060 GAAAATCTGCAT 73071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||||| ||| || || || ||||| | | | Sbjct 762595 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 762654 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || | ||||| ||||| || || ||||| || ||||| ||| | || | || | | Sbjct 762655 AATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTCGACTTGACGT 762713 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | || ||||| || | || | ||| ||||| ||||| || || Sbjct 762714 TG-TCAATGGTATCAGATGATTCCACTTCCAGGGTAATCGTCTTACCCGTCAGTGTCTTG 762772 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 762773 ACAAAGATCTGCAT 762786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || |||||| || || || || | | Sbjct 763049 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCA 763108 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| || || || ||||| ||| || || | Sbjct 763109 AAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 763168 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | ||| || || ||||| || || Sbjct 763169 TTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTG 763228 Query 138601 AC 138602 || Sbjct 763229 AC 763230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||||| ||| || ||| || || || ||||| | | Sbjct 762823 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAA 762882 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || ||||| ||||| ||||| ||||| || ||||| ||| | || | || | | Sbjct 762883 AATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGACGT 762941 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | || || | ||||| ||||| | || | || || || || || || || Sbjct 762942 TG-TCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTG 763000 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 763001 ACGAAAATCTGCAT 763014 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || || || | Sbjct 763335 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCG 763394 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || || || ||||| ||| || || | | Sbjct 763395 AAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 763454 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||||| || | || || || || || || || Sbjct 763455 TTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 763513 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 763514 GACGAAGATCTGCATG 763529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261364052240