Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13]
167 sequences; 32,472,817 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq138 217 1e-51
seq86 197 1e-45
seq140 113 4e-20
>seq138
Length=1076999
Score = 217 bits (240), Expect = 1e-51
Identities = 744/1141 (65%), Gaps = 33/1141 (3%)
Strand=Plus/Minus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || ||||| || || | || |||| | || | ||| |||| | |
Sbjct 837572 GGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 837513
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| ||||||| ||||| || || |||| || | || || ||||| || |
Sbjct 837512 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGA 837453
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
| | ||| || || | |||||| | || | ||||| | | | ||| ||||
Sbjct 837452 CAAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCC 837393
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265
|||| | || || | ||| ||||||||||||||| | | || |||| || ||
Sbjct 837392 ACAGGTCGGAGGGCTTGACGTCCCACATGTCGTACTGGAGGATAC-CCTCAGATGCAGGC 837334
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325
| || || | | ||| ||| ||| | ||| | || | ||| || ||
Sbjct 837333 GATCCCTTGAACGATTCA-TAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAG 837275
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385
||| ||| ||| ||||| ||| ||| || || || || || || || |||
Sbjct 837274 GGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 837215
Query 153386 GTACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
| |||| ||||| ||| | || ||||| || || ||||||| |||||| ||||| |
Sbjct 837214 AAAGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGATAG 837156
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502
|||| || | ||||||| | || ||| || | ||| ||||| || ||||||
Sbjct 837155 GTCGGTGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGACGGGGTAGTGGTTCACATCGAT 837098
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
|| |||||||||||| || ||||| || || | | | ||| |||| ||| || ||
Sbjct 837097 GATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTA 837038
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
| |||| | | || | | ||| | ||| |||| || ||||||||
Sbjct 837037 GCAGCCCTCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGACGGC 836978
Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTTAT 153679
||| |||| | | | ||||| | |||||||| ||||||||| ||||| ||
Sbjct 836977 GACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGG---AT 836921
Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
| |||||| || | ||| ||||| ||||| ||||| ||| ||| |||||||| | ||
Sbjct 836920 GGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGG 836861
Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799
||||||||| || | || | || | ||| | ||| || || |
Sbjct 836860 GTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAGCTTCTGAGCACGAATGGT 836801
Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859
|| ||| || ||||| |||||||| |||||||| ||||||||| ||||||||
Sbjct 836800 CTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTA 836741
Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916
|||||| || ||||| || || | | || ||||| |||| ||| || | || |
Sbjct 836740 GCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTTC 836683
Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976
| ||| || |||||| ||||| || | ||| || || | | |||||| ||
Sbjct 836682 -TCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGC--- 836627
Query 153977 GCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGT 154032
|| | ||||| | || || | | || | |||| || | | | ||| ||||||||
Sbjct 836626 GCGAACCTCCTCCTTGCCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGT 836568
Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGT 154089
||||||| || | ||||| ||| | |||||| |||||| || ||||| |||||||
Sbjct 836567 GCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGT 836508
Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGG 154149
|| | | ||||||||||| |||| |||||| | |||| | | |||||||||||
Sbjct 836507 ATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 836448
Query 154150 T 154150
|
Sbjct 836447 T 836447
>seq86
Length=1711676
Score = 197 bits (218), Expect = 1e-45
Identities = 510/765 (67%), Gaps = 29/765 (4%)
Strand=Plus/Plus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | |||| |||||||||||| | || ||
Sbjct 1357906 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGC 1357965
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAA-CTCGAGGCGCA 52204
|| || ||| ||||| ||||| | | |||||| | ||| || | |||||| |
Sbjct 1357966 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATTCCCGAGGCTCG 1358024
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
| ||| || || || | | || ||| | | ||| | |||| |||| |||||
Sbjct 1358025 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCT 1358084
Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321
||| || || || | | | | |||||| ||||| || || | || || | ||
Sbjct 1358085 CATCGA-CA-CTTACATCA-AGGAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 1358141
Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381
| | | || ||| ||||||| ||||| | ||||| || |||||| || | | |
Sbjct 1358142 GACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAA 1358201
Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
| | | | ||| ||||| | || ||||| ||| ||||||||| | || || |||
Sbjct 1358202 CTCGTCCTTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGG 1358261
Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501
||||||| ||||||| | | || | | ||| | |||||||||||||| ||
Sbjct 1358262 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTC 1358321
Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACT- 52557
||||||| | || || || ||||| || ||||||||||||||||| ||||| || |||
Sbjct 1358322 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC 1358381
Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612
|| |||| |||| | | || | |||||| ||| ||| |||
Sbjct 1358382 TCACCTGAAGAACCGCGCCAGC-AAGGAGGTGATTCG----------TGA-CATCATCAC 1358429
Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672
|| || || ||||| |||||||||| || | || ||||| || ||||||||
Sbjct 1358430 CGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGG 1358489
Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
||||||| | | |||| ||||||| |||||||| || || || ||| ||||
Sbjct 1358490 CATGAACTCCAACCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGC 1358549
Query 52733 GCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792
||||| | ||| | ||| | ||| || ||||| |||||| | ||||||||
Sbjct 1358550 CCTCGGCAATGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTC 1358609
Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 1358610 CCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 1358654
>seq140
Length=1272624
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || || |||| | |
Sbjct 72880 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 72939
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 72940 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 72999
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||| | || | ||| || || || || || || ||
Sbjct 73000 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 73059
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 73060 GAAAATCTGCAT 73071
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| ||||| ||| || || || ||||| | | |
Sbjct 762595 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 762654
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
|| | ||||| ||||| || || ||||| || ||||| ||| | || | || | |
Sbjct 762655 AATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTCGACTTGACGT 762713
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | ||| || | || ||||| || | || | ||| ||||| ||||| || ||
Sbjct 762714 TG-TCAATGGTATCAGATGATTCCACTTCCAGGGTAATCGTCTTACCCGTCAGTGTCTTG 762772
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 762773 ACAAAGATCTGCAT 762786
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | || || |||||| || || || || | |
Sbjct 763049 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCA 763108
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||||||||| || || || ||||| ||| || || |
Sbjct 763109 AAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 763168
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||||| ||||||| || | ||| || || ||||| || ||
Sbjct 763169 TTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTG 763228
Query 138601 AC 138602
||
Sbjct 763229 AC 763230
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| ||||||||||||||||||| ||| || ||| || || || ||||| | |
Sbjct 762823 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAA 762882
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
|| || ||||| ||||| ||||| ||||| || ||||| ||| | || | || | |
Sbjct 762883 AATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGACGT 762941
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | || || | ||||| ||||| | || | || || || || || || ||
Sbjct 762942 TG-TCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTG 763000
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 763001 ACGAAAATCTGCAT 763014
Score = 89.7 bits (98), Expect = 5e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||| || || || || |
Sbjct 763335 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCG 763394
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 763395 AAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 763454
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||| ||||||| || | || || || || || || ||
Sbjct 763455 TTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 763513
Query 138600 TACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 763514 GACGAAGATCTGCATG 763529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261364052240
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