Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq138 223 4e-53 seq86 118 1e-21 seq124 82.4 9e-11 >seq138 Length=1076999 Score = 223 bits (246), Expect = 4e-53 Identities = 898/1387 (65%), Gaps = 53/1387 (4%) Strand=Plus/Minus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || ||| |||| | | |||||||||| ||||| ||| Sbjct 837570 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 837511 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || ||||| || ||||| |||| ||| || | || ||| |||||||| || || | Sbjct 837510 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACA 837451 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA- 116042 || | ||||||||||| ||| | || | || | |||||||||| |||||| || | Sbjct 837450 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 837391 Query 116043 --GT-TGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGG 116099 || ||| | || | |||||||| || ||||||||||||| | || || || Sbjct 837390 AGGTCGGAG----GGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGG 837335 Query 116100 CGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAG 116159 |||||||| || | ||||| |||||||| |||| || | || | || || || Sbjct 837334 CGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAG 837275 Query 116160 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC 116219 ||| || || || || ||||| || || | |||| | |||||| || || Sbjct 837274 GGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 837215 Query 116220 AAACGCGAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTG 116278 ||| | |||| ||| | | || | || || || || |||||||||| || || | Sbjct 837214 AAAGGGCAGAC-GCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGATAG 837156 Query 116279 GGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAA 116338 | || || | ||| || || ||||| || ||||| || ||| |||||| | Sbjct 837155 GTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACGGGGTAGTGGTTCACATCGATGA 837096 Query 116339 CCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC 116398 | || || || | ||| ||||| |||| ||| |||||||| | | | || | | Sbjct 837095 TGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGC 837036 Query 116399 TGCGAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG 116455 || ||| | | | ||| | |||||||| | || |||| || || || | Sbjct 837035 AGC---CCTCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGACGG 836979 Query 116456 AGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGG 116515 | ||| || || |||||| || || || || || | || || || |||| Sbjct 836978 CGACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGGATGG 836919 Query 116516 TGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCG 116575 ||||||||||||| || || ||| ||| || |||||||||||||| | || Sbjct 836918 TGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGT 836859 Query 116576 TCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCAC-AGT 116633 | || ||||| || |||| || ||||| | | ||| | || ||| |||| | | Sbjct 836858 TACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCA-----CAGCTTCTGAGCACGAAT 836804 Query 116634 GGCGTT---GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690 || || | || |||||| |||||||||| ||| || ||||||||||| || | Sbjct 836803 GGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC-GC 836745 Query 116691 CACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--C 116746 | ||| || | || || || || || | || || | ||| | ||| | ||| Sbjct 836744 CGTAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGT 836688 Query 116747 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 116806 || ||| || |||||||||||||| || |||||||| || || ||| | || || Sbjct 836687 TCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGG 836628 Query 116807 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 116866 |||| | || || | || || || || | || | ||||| | || || |||| Sbjct 836627 CGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGT 836568 Query 116867 GCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTA 116920 |||| || || ||||| | |||| | || | |||| ||| |||||| | Sbjct 836567 GCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTG---TTGCCACCCTGGTCGA 836511 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | || || ||| || || || ||||| || || || || | || ||| | Sbjct 836510 CGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGT 836451 Query 116981 TTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACC 117038 | || || ||| || ||| | |||| | || ||||| || || ||| ||||| Sbjct 836450 TGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGTTCAAACCGATACC 836393 Query 117039 CCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 117098 || ||| ||| ||||| || ||| | | ||| || | ||||| || || || Sbjct 836392 ACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCT 836333 Query 117099 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGT 117157 |||| |||| | | | | |||||| |||| || ||| | || |||||||| | Sbjct 836332 GTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCAT 836274 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTC 117215 |||||||||| || | |||||| ||| | | |||| |||||| | ||| ||||| Sbjct 836273 TGAAGAGGGTAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTGGTATGTCTC 836216 Query 117216 CAAGACA 117222 | |||| Sbjct 836215 GAGGACA 836209 >seq86 Length=1711676 Score = 118 bits (130), Expect = 1e-21 Identities = 344/521 (66%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 1358366 GCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 1358307 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 1358306 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATG 1358247 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 ||||| ||| || || |||| || |||| ||||||||| || | |||| | | Sbjct 1358246 CCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGAT 1358188 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| |||||||| | ||||| || || || || | ||||| || || | || Sbjct 1358187 CCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 1358128 Query 127759 GAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 ||| | || | | || | || |||||||| | || ||||| || || || | Sbjct 1358127 GAGGTAGTTGCGCT-GGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCT 1358069 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| |||| || ||| ||| Sbjct 1358068 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATC 1358010 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| || || || | || Sbjct 1358009 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCG 1357950 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 1357949 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 1357890 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| || ||||| || || || | ||| || || ||||| Sbjct 1357889 TCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 1357849 >seq124 Length=860675 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||||| |||||| |||||||||||||| | ||| || || ||| | ||| | | | Sbjct 195160 ACCGATGGCGTCGATTTCGTCAATGAAGATGATGCAGGGCGCATTCTTTCGGCCTTCCGC 195101 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 || | |||||||| | | || || || ||||||||||||||||| | || | Sbjct 195100 GAACAAGTCTCGCACACGAGAAGGGCCCACGCCAACAAACATCTCCACAAACTCGGATCC 195041 Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | || | || |||||| ||| || || || || |||| ||| || || |||| Sbjct 195040 GCTCACGCT-GAAGAAGGGCACGCCAGACTCTCCAGCAGTGGCCTTGGCAAGAAGCGTCT 194982 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || ||||| || ||||||| ||| || || || ||| ||||||| Sbjct 194981 TTCCTGTTCCTGGAGGACCGGCGAGAATGGCGCCGCGAGGAATCTTGGCACC 194930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505919303720