Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq86 235 9e-57 seq138 145 1e-29 >seq86 Length=1711676 Score = 235 bits (260), Expect = 9e-57 Identities = 566/841 (67%), Gaps = 23/841 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| ||| ||| || ||||| || | || ||||| Sbjct 1358640 CTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTT 1358581 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | || || || |||| | ||||| || |||||| | ||| || ||||| | Sbjct 1358580 GGACGACTTG-TACACCTTCTCATTGCCGAGGGCAACCAGCAGGCGGTCGGCAACAAACT 1358522 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTT 159824 | ||||| || | ||| | | |||| || |||||||| | || || || || | Sbjct 1358521 CAATGTA-CTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAA--GGCAGAGCCT 1358465 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG-CGAGACACGTTCG 159883 | | || |||||||| ||| || ||| || ||||| | || | ||| ||| | | Sbjct 1358464 CGGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCT 1358405 Query 159884 TAC---CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | | | ||| | | | ||| | ||| ||||| |||||||| |||| Sbjct 1358404 TGCTGGCGCGGTTCTTC----AGGTGAGAGTG---CAGCAGGCAGGCAAAGTCCGTGTGC 1358352 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||| |||||||||| ||||||||| | | | ||||| ||||||| || ||| Sbjct 1358351 AGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGC 1358292 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| || |||| ||||| |||||||| || ||||| ||||| || || ||| Sbjct 1358291 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGCGGCA 1358232 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || ||||| | || |||| || | ||| |||| ||| |||| | | ||||| Sbjct 1358231 AAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAATCGCCCAG 1358172 Query 160121 TCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 || |||||||| |||| |||| || ||| ||| | |||||| || | || ||| Sbjct 1358171 TCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTG 1358113 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | |||||||| ||| | || ||| |||||| | || | ||| | || || Sbjct 1358112 GCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTTCTC 1358053 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 || ||||| ||| |||||| | ||||| || ||| ||||| |||| Sbjct 1358052 CATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTGAA 1357993 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | | |||| || | || || | ||||| | ||| || ||||| |||| | ||| Sbjct 1357992 GCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTG 1357933 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGGG 160418 ||||||||| | ||||||| | ||| || | || | ||||| ||| || ||| | || Sbjct 1357932 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGGTCCTTGG 1357874 Query 160419 CCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA 160478 || |||| |||||| ||| |||| || ||||| || |||||||||| ||||| Sbjct 1357873 ACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGA 1357814 Query 160479 T 160479 | Sbjct 1357813 T 1357813 >seq138 Length=1076999 Score = 145 bits (160), Expect = 1e-29 Identities = 386/576 (67%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAAT-GGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCG 203899 || || |||||||| || |||| || | || |||||| | | || |||||||||||| Sbjct 837915 TCAACGGTGAACTGGATAGGCG--CAGCTGC-GGCCTGGGTACGGAGGTAGTACATGCCG 837859 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || || || ||| ||| | ||||||| | | |||| || ||||| Sbjct 837858 GTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATCGTGGGG 837799 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || |||||| ||||| || |||||| ||||||||||||| | ||||| || ||| Sbjct 837798 TCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCAGCCGCC 837739 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | || ||| ||| ||||||||||| || |||||| ||| | | || ||| Sbjct 837738 ATCTGGACAATTTGACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCC 837679 Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | | | | || || ||| |||||||| ||||| || | | || || | Sbjct 837678 TCGGGGATGT-TGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTCTTCAT 837620 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||||| ||| || ||| ||| | || |||||||| | ||| Sbjct 837619 GGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTG 837560 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | ||| | | | |||| ||| | || ||||| || Sbjct 837559 GAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCATTC 837500 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||||||| | ||||||| ||| ||||| |||||||| ||||| | |||| | ||| Sbjct 837499 GTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACAAGCAAGCTGTT 837440 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCA--TCGCACT 204375 ||| ||||||| | | || |||| ||| || ||| ||| || || ||| | Sbjct 837439 GCGGACACCGTGCTCCTTGA-TCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGGA-- 837383 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 ||| || ||| ||||||||||| |||| | ||| || Sbjct 837382 GGGCTTGACGTCCCACATGTCGTACTGGAGGATACC 837347 Score = 113 bits (124), Expect = 7e-20 Identities = 466/722 (65%), Gaps = 20/722 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||||||||| | |||| || | |||| | || |||||| Sbjct 836956 CTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCT 836897 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| ||| ||||||||| | |||||| || | ||| |||| |||| | Sbjct 836896 CTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTC 836837 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTG-CTT-----CACGTACATCCCTTG 205056 ||||||| | ||||| | ||| | | | | | ||| ||||| | ||||| Sbjct 836836 CAGAATGGAGTACCACAGCTTCTGAG-CACGAATGGTCTTACGACCACGTCCCTCCCT-- 836780 Query 205057 AGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGG 205116 |||||| ||| |||||| ||| |||| || ||||| ||| || || || Sbjct 836779 ---CTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGG 836723 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATC-TGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| ||||| ||||| || | ||| | | || || | || | || ||| || | Sbjct 836722 GCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCGACACGCTTCATGAAGA 836664 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 | ||| ||||||||| | |||| || ||||| | || | || | || ||| Sbjct 836663 GATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGT 836604 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| | || || ||| | | | |||||||||||| ||||| | | | ||| Sbjct 836603 TCTTGCGGAGATCAAG-GAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCG 836545 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || | |||||| ||||||||||| || || | | |||||| ||| Sbjct 836544 AAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACT 836485 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 |||||||| || | | ||||||| ||| ||||| |||| | |||| ||||| Sbjct 836484 CGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTG 836425 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | | | | || | | || || || |||| ||||| |||| ||| ||| Sbjct 836424 GCACGGATGCGGTGGACGTTCAAACCGATACCACCAGCCATCTTGGAGATCATGGCACAC 836365 Query 205475 -TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT-CACCAGATAGC 205532 |||| ||||||| ||||| || | ||| || ||| || ||| ||||| ||| Sbjct 836364 GTCTT-CAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCA-TGTCCACCAAGAAGC 836307 Query 205533 ACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 | || | ||||| ||| ||| || || | |||||| || ||| ||||||| ||| Sbjct 836306 ATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGA 836247 Query 205593 AG 205594 || Sbjct 836246 AG 836245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153540113520