Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq140 127 5e-24 seq162 93.3 1e-13 >seq140 Length=1272624 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||| |||| ||||||||| || || Sbjct 72851 CGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 72910 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||| || |||||||||||||| || || Sbjct 72911 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 72970 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 72971 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 73030 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || ||||| || Sbjct 73031 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 73068 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| | | || Sbjct 763308 CGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 763367 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| ||||||||||||||||||||||| || ||| || Sbjct 763368 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATGCCC 763427 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 763428 TCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGG 763487 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 763488 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 763525 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| || |||||||| || | ||||||||| | | || Sbjct 763022 CGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTT 763081 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || |||||||||||||||||||||||| || || Sbjct 763082 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCC 763141 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 763142 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGA 763201 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||||||||| || || || || || || Sbjct 763202 GTGATCGTCTTGCCGGTCAGGGTCTTGAC 763230 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || |||||| || | ||||||||| || ||| | || ||| Sbjct 762803 AGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCT 762862 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||| || || ||||||||||| ||| ||| || || ||| Sbjct 762863 TCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTCC 762922 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| || || | || || || |||| ||||| ||| Sbjct 762923 TGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTC 762982 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 762983 TTTCCTGTGAGGGTCTTGACGAAAATCTG 763011 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||| |||| ||||||||| || || | || ||| Sbjct 762575 AGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCT 762634 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || || || | ||||||||||| || || || || ||| Sbjct 762635 TCCAGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC 762694 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | ||| || | || ||| || |||| || |||||| Sbjct 762695 TGAATCTTCGACTTGACGTTGTCAATGGTATCAGATGATTCCACTTCCAGGGTAATCGTC 762754 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || ||||| || || Sbjct 762755 TTACCCGTCAGTGTCTTGACAAAGATCTG 762783 >seq162 Length=142150 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || || | ||||| || |||||||| || ||||||| Sbjct 93819 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 93760 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 93759 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93700 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 93699 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 93640 Query 199620 A 199620 | Sbjct 93639 A 93639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919077476189