Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq140 140 4e-28 seq162 125 8e-24 >seq140 Length=1272624 Score = 140 bits (154), Expect = 4e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||||| ||||| ||||||||| || ||||| | Sbjct 72857 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 72916 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 72917 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 72976 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 72977 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 73035 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 73036 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 73076 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||||| ||||| ||||||||| || || || |||| || Sbjct 762578 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 762637 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||||||||||||||| | ||| | | |||||||||| Sbjct 762638 AGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGA 762697 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | || || |||||||| |||| || || || || Sbjct 762698 ATCTTCGACTTGA-CGTTGTCAATGGTATCAGATGATTCCACTTCCAGGGTAATCGTCTT 762756 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || |||||||| ||||| Sbjct 762757 ACCCGTCAGTGTCTTGACAAAGATCTGCAT 762786 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| || || || | || || Sbjct 763320 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 763379 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | ||||||||||| | || | || |||||||||| | Sbjct 763380 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 763439 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | |||||| ||| || || || | |||||||| ||| Sbjct 763440 ATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 763499 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 763500 CCGGTGAGGGTCTTGACGAAGATCTGCAT 763528 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| || |||||||| || || ||||||||| |||||||| |||| || Sbjct 762806 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 762865 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| |||||||||||| | || | | |||||||||| Sbjct 762866 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGA 762925 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | || || || || || |||| |||||||| || Sbjct 762926 ATCTTGGACTTGA-CGTTGTCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTT 762984 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| Sbjct 762985 TCCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || || | |||| |||||| || || ||||||||||| || || || |||| || Sbjct 763034 ACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCA 763093 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||| | || | || |||||||||| | Sbjct 763094 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 763153 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||| || || || || | ||||| || || Sbjct 763154 ATCTTGGACTTGA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTT 763212 Query 46564 GCCCGTCAGCGTTTTAAC 46581 ||| ||||| || || || Sbjct 763213 GCCGGTCAGGGTCTTGAC 763230 >seq162 Length=142150 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || ||||||||||| || ||||| | Sbjct 93819 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 93760 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 93759 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93700 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 93699 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 93640 Query 46584 AG 46585 || Sbjct 93639 AG 93638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237220064840