Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq86 343 1e-89 seq140 131 2e-25 seq162 102 8e-17 >seq86 Length=1711676 Score = 343 bits (380), Expect = 1e-89 Identities = 578/826 (70%), Gaps = 19/826 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| ||||||| | |||||| || ||||||||| Sbjct 1358639 TTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTTG 1358580 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| |||||| || | || ||||| | |||||| || ||| Sbjct 1358579 GACGACTTGTACACCTTCTCATTGCCGA---GGGCAACCAGCAGGCGGTCGGCAACAAAC 1358523 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 || ||||| ||| |||| | | | || | |||||||| |||| ||||| || || Sbjct 1358522 TCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAA-GGCAGAGCCTC 1358464 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| | ||| ||||||||| ||| |||||||||| ||| || | || | || Sbjct 1358463 GGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCTT 1358404 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | || | | || || | || || ||| |||||||| |||| ||||| Sbjct 1358403 GCTGGCGCGGTTCTTCAGGTGAGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTC 1358344 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | || ||||| |||||| || |||| |||||||||||| || || || ||||| Sbjct 1358343 GTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAG 1358284 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || ||||||| ||||||||| || || || || || Sbjct 1358283 CCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGCGGCAAAGGCAAC 1358224 Query 133041 CAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 ||||||| | | || | | ||||| | |||| ||||| || | |||||| |||||| Sbjct 1358223 GAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGG--ATCCATCGAATCGCCCAGTCGGCC 1358166 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158 || | | ||| || || || || |||||||| || | | |||| | || | Sbjct 1358165 TTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGTTGCGCTGGCTGT 1358108 Query 133159 GAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | | ||| ||||||||||| || ||| | || ||||| | ||||||||| Sbjct 1358107 GCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTTCTCCATCA 1358048 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 ||| || |||||||| ||||| || |||||| | ||| || || ||| |||| Sbjct 1358047 TGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCT 1357988 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 ||||||| || |||||||| |||||||| ||||||||| |||||||| | ||| || Sbjct 1357987 CGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGA 1357928 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||| | ||||| ||||||| ||| | ||||||| || |||||||||||||| Sbjct 1357927 TGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGT 1357868 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||| ||| ||||||| || || |||||||| ||||||||||| Sbjct 1357867 CAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 1357822 >seq140 Length=1272624 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 763528 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 763469 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| | ||||| Sbjct 763468 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 763409 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || || | || |||||| |||||||||| Sbjct 763408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAAC 763349 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 763348 ATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCG 763314 Score = 122 bits (134), Expect = 9e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 73074 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 73015 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 73014 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 72956 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || ||||| ||||| || || | |||||||| | |||||| Sbjct 72955 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 72896 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| ||||| Sbjct 72895 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTGCG 72857 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || |||||| | | Sbjct 763014 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 762955 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || || || | ||||| ||||| ||||| | ||||| Sbjct 762954 GATACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGACCA 762896 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 762895 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAA 762836 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||| || ||||| ||||| || ||| Sbjct 762835 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGT 762799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| || ||||| |||| || ||| || | |||| | | Sbjct 763232 TCGTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCG 763173 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || || | ||||| ||||| ||| Sbjct 763172 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTC 763114 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || |||| || |||||| |||||||||||| || ||| Sbjct 763113 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATTCAGAAG 763054 Query 38433 GA 38434 || Sbjct 763053 GA 763052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || |||||| ||||| ||||| | |||| || || || |||||||| Sbjct 762693 GACAAGGAGGGTAT-CCCGCCTGACCAGCAGCGCTTGATTTTTGCTGGTAAGCAGCTGGA 762635 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGC 38454 |||| || ||||| | ||||||||||||||| ||||| ||| || ||||| |||| | Sbjct 762634 AGACGGTCGTACCCTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCACCTGGTTC 762576 Query 38455 TGCGTTTGAGAGGCGGCC 38472 | ||| | | || |||| Sbjct 762575 TCCGTCTCCGTGGTGGCC 762558 >seq162 Length=142150 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 93639 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 93698 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 93699 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 93758 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || ||||| ||||||||||||||| ||| Sbjct 93759 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 93818 Query 38433 G 38433 | Sbjct 93819 G 93819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171755889280