Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq140 123 2e-23 >seq140 Length=1272624 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | ||| Sbjct 1078411 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 1078352 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 1078351 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 1078293 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 1078292 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 1078233 Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969 | | |||| |||||||||||| || Sbjct 1078232 CGCAGGACCGCTGGTAGAGCTGGCA 1078208 Score = 111 bits (122), Expect = 1e-19 Identities = 256/380 (67%), Gaps = 8/380 (2%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || ||||| | ||||| |||||||| |||| | || | Sbjct 1078112 TGTGGCAGGGCGGGAGGGCCATCTTGTTGAAGTCGCGCGGGTTCCACGCGCTGAGTATCA 1078053 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | |||||||| | |||||| | | | || ||| | |||||| || || | Sbjct 1078052 TCCGCCTGTCATACGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACGC 1077993 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 || | || | |||||| | | ||| |||||| || || || |||| |||||||| Sbjct 1077992 CCTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGA 1077933 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | ||||| || || |||||||| || | || | |||| | | ||| |||| | | Sbjct 1077932 AGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCCGACGCTGTCGAGGA 1077873 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTG-- 30303 | || | ||| |||||| ||||||||||||| || || | || | ||| || ||| | Sbjct 1077872 ACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGAC 1077814 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 ||| | || ||||| || |||||| || ||||| | |||||||| ||||| Sbjct 1077813 GAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACG 1077757 Query 30364 CTCTTGGTCGTGAGGAGGGG 30383 | ||| || ||||||||||| Sbjct 1077756 CGCTTCGTGGTGAGGAGGGG 1077737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616768335491