Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq138 306 7e-78 seq86 241 2e-58 >seq138 Length=1076999 Score = 306 bits (338), Expect = 7e-78 Identities = 961/1453 (66%), Gaps = 67/1453 (5%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||| |||||||| |||||| |||||| || ||| | ||||||||||| Sbjct 837276 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAG-CTCGCGAGCCTCGGGAGA 837218 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||| |||||| | || |||| || || ||||| || |||| |||||| Sbjct 837217 CTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGAT 837158 Query 221539 GGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || | ||| | | ||||| | ||| | || |||| ||||| || ||| || ||| Sbjct 837157 AGGTCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGG-ACGGGGTAGTGGTTCACATCG 837100 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||||||| | || || || || ||| ||||||| || Sbjct 837099 ATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCT------TG 837046 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || | | || ||| |||| | | || ||||| ||| ||||| | |||| Sbjct 837045 AAGTCGTA---GCAGCCCTCGTTGTAG---TCAACAAAGGCGGGAAGGGCCAGAGAGGCC 836992 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTACAGAGG 221773 | ||| || ||||| |||||||| | || | |||| |||||||| || |||||| Sbjct 836991 AAGTTGCAGACGGCGACCTCGTC---GGGGGCACAGTACTCAATGATCTCGGTGCAGAGG 836935 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| |||||| |||| || || || || |||||| ||| ||| | || Sbjct 836934 TTAGAGCTGCG---GATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTC 836879 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| ||||| || ||||| ||| ||| ||||||| || ||| || Sbjct 836878 CTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAG 836819 Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAG 221947 | |||| || | | ||| | ||| | ||||| ||| | | || || || Sbjct 836818 CT-TCTGAGCACGAATGGTCTTAC-GACCACGTCCCTCCCTCTCGTACTTTTCG-TACAG 836762 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | |||||| || ||||| || | ||||| || || | ||| ||||| Sbjct 836761 AGCCT--CAAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATG 836704 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||||| | ||| | | ||| | || ||||||||| || ||||||||||| || Sbjct 836703 AGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCA 836644 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | || | || || ||||||| ||||| ||| || | ||||| | || Sbjct 836643 AGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAG 836584 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||| | ||| |||||||| ||||| || |||| ||| | || || || ||||||||| Sbjct 836583 TCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTG 836524 Query 222188 CCACCCTGATCCACC-ATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| || || ||| ||| | |||||||| || || | || | | | Sbjct 836523 CCACCCTGGTCGACGTATCGGG--CAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGC 836466 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGC 222303 ||||||| ||||||||||| ||||| | || ||| | || | | ||| Sbjct 836465 CGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCAC---GGATGCGGTGGA 836409 Query 222304 AGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | || ||||||||||| || || ||||||||||| || |||| |||||||| Sbjct 836408 CGTTCAAACCGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCAT 836349 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| ||||| || ||| ||||| | || || || || || || |||| ||| | || Sbjct 836348 AGATACCCTCAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTT 836289 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | || || || || || || || || |||||| || ||| | || ||||| | Sbjct 836288 GCGGGGTACCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGA 836229 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATC 222539 | | ||| ||||| | ||| | | |||| ||| ||| || ||| | ||| || Sbjct 836228 GGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGA---TGCCAACGGCCACTC 836172 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 |||| ||||| ||| |||| ||| ||| || | ||||| ||| ||||| || Sbjct 836171 GCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGA--AGGTATGA 836114 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | ||||| |||||||| |||||||| | | || ||||||| | ||| || | ||| Sbjct 836113 TCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 836054 Query 222658 GGCGTCCAGCTCCGACTTGT---GCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAG 222714 || ||| |||||| ||||| || | || | | || | | || || | | Sbjct 836053 GGAGTCGAGCTCCTCCTTGTGGCGCATGACAC---ATTCATACGTGTCCTTGGAGATCAT 835997 Query 222715 GGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGA 222774 ||| | | | ||| | | |||||| || | |||||| || | | | | || | || Sbjct 835996 GGGCGAGGCCCTGTTGTTCTTGGGGTTGACATAGTGGTAGAGGTCGCTGACGACAGCTGA 835937 Query 222775 GAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATAC 222833 || | || | ||||||||||| || || || |||||||| || | |||| ||| Sbjct 835936 CCACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAGGATGG 835878 Query 222834 CATAGTCAGGGTG 222846 ||||||| ||||| Sbjct 835877 CATAGTCGGGGTG 835865 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 837571 GTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 837512 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||||||||||| || ||||| |||||||| || || || Sbjct 837511 CTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGAC 837452 Query 221236 CAGCAGACTGTTGCG 221250 |||| |||||||| Sbjct 837451 AAGCAAGCTGTTGCG 837437 >seq86 Length=1711676 Score = 241 bits (266), Expect = 2e-58 Identities = 566/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | || ||||||||||||||||||||| ||| Sbjct 1357813 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 1357872 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 1357873 TCCAAGGACCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 1357931 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| ||||| || ||||| || || || || |||||||| ||| |||| | Sbjct 1357932 TCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 1357991 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| ||||| || |||||||| |||||||| || Sbjct 1357992 CTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1358051 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| ||| || ||| | || ||||| | || | Sbjct 1358052 GGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTACATCAAGGAGCACAG 1358111 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || ||||| ||| ||| || |||| | |||||| Sbjct 1358112 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGA 1358171 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| || |||||| | | ||| | | | |||| | |||| || || ||||| Sbjct 1358172 CTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGCCTCGTTGCCTT 1358231 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| ||||| ||||||||||| ||||||||| | ||||| ||||||||||||||||| | Sbjct 1358232 TGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAA 1358291 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| ||| ||||||||||||||||||| | ||||||||||| Sbjct 1358292 GCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 1358351 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG- 26071 |||| || |||||||||||||| || | ||| || | |||| | | || Sbjct 1358352 GCACACGGACTTTGCCTGCCTGCTGCACTC---TCACCTG----AAGAACC-GCGCCAGC 1358403 Query 26072 -AGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || || || ||||||| || || || |||||| |||||||| Sbjct 1358404 AAGGAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACC 1358463 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 ||||||||||| || ||||||| || ||||||||| Sbjct 1358464 GAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAG 1358523 Query 26188 TATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 | ||| ||||||| |||||| |||| || || | | | |||| || | | Sbjct 1358524 TTTGTTGCCGACCGCCTGCTGGTTGCC--CTCGGCAATGAGAAGGTGTACAAGTCGTCCA 1358581 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||||||||| ||||| || ||| || |||||||||||||| || ||| Sbjct 1358582 ACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGC 1358641 Query 26306 GGGTCGGCGACTATCA 26321 | |||| |||||| || Sbjct 1358642 GCGTCGCCGACTACCA 1358657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842861036480