Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq140 89.7 3e-12 >seq140 Length=1272624 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| ||||||||||| | || || || ||||| || || || |||||| Sbjct 762632 TCTTCCAGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTG 762691 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| ||||| ||||| ||||||| || | | ||| |||||||| Sbjct 762692 TCCTGAATCTTCGACTTGACGTTGTCAATGGTATCAGATGATTCCA-CTTCCAGGGTAAT 762750 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| || || || || Sbjct 762751 CGTCTTACCCGTCAGTGTCTTGACAAAGATCTG 762783 Score = 87.8 bits (96), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| || |||||| || || || || || || | || ||| Sbjct 763022 CGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTT 763081 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || ||||| ||||| |||||||| || ||||| || || || ||||| || || Sbjct 763082 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCC 763141 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| ||||| || || || |||| | | || || Sbjct 763142 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGA 763201 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || ||||| || ||||| |||| Sbjct 763202 GTGATCGTCTTGCCGGTCAGGGTCTTGACGA 763232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172036559716