Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq138 192 7e-44 seq86 102 1e-16 >seq138 Length=1076999 Score = 192 bits (212), Expect = 7e-44 Identities = 1178/1858 (63%), Gaps = 61/1858 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || ||| || | || |||| |||||| |||| | | Sbjct 836087 TACTTTGGCTTCAAGACGCTGGAGC-GATCATACCTTCTGAAGCTCGACGGCAAGATTGT 836145 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || |||||| ||||| ||||||| || || | |||||| || || |||||||| Sbjct 836146 CGAGCGGCCACAGCACATGATCATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGA 836205 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 |||| | ||||||||| || |||||| |||| | | ||| ||||| | || Sbjct 836206 GCGTGTCCTCGAGACATACCACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCT 836263 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 |||||||||||||||||||| || | | ||| ||||| |||||| | | | || Sbjct 836264 ACCCTCTTCAATGCTGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTGGACATG 836323 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || | |||||||||| ||||| | | |||||| ||||| ||| Sbjct 836324 AAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATCTCCAAG 836383 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG 75501 |||||| ||||| || || || |||| | | |||| | ||| || ||| Sbjct 836384 ATGGCTGGTGGTATCGGTTTGAACGTCCACCGCATCCGTGCCACT--GGCTCCTACATCG 836441 Query 75502 -GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || || || || | || ||||| || ||||| || || || ||| ||| | Sbjct 836442 CCGGCACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTG 836501 Query 75561 CGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGG 75614 | || || || | || | || ||||| || || |||| ||||| | | Sbjct 836502 CCCGATACGTCGACCAGGGTGGCAACAAGCGTC---CTGGTGCCTTCGCCATCTACCTCG 836558 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAG 75674 | || ||||| ||||| || | || |||||||| | || ||||| || | || | Sbjct 836559 AGCCCTGGCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGG 836618 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 ||| ||| | || || || | | | |||||||| || || || ||||||||||| Sbjct 836619 AGGTTCGCGCCCGCGA-CTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGT 836677 Query 75734 GTTGAG--GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCC 75790 || ||| || ||| | ||| | || | || || || || || || || || | Sbjct 836678 GTCGAGAAGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCT 836734 Query 75791 GACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCC 75850 ||| || ||||||||||| || || ||| |||||| || |||||| | | Sbjct 836735 GACTGCTACGGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGT 836794 Query 75851 AATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 | ||| | | | | | || | | ||| | | ||||| | | ||||| ||||| Sbjct 836795 CGTAAGACCATTCGTG-CTCAGAAGCTGTGGTACTCCATTCTGGAGGCCCAGACCGAGAC 836853 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || | || | ||||| |||||||| || ||| ||||| ||||| ||||| || Sbjct 836854 CGGTAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTT 836913 Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029 ||| || ||| ||||| || || ||||| || || | |||||| | || || Sbjct 836914 GGGCACCATCCGCAGCTCTAACCTCTGCACCGAGATCATTGAGTACTGTGCCCCCGACGA 836973 Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAGAC 76086 | || || ||||| ||||| || | |||||||| | ||| | | | ||| Sbjct 836974 GGTCGCCGTCTGCAACTTGGCCTCTCTGGCCCTTCCCGCCTTTGTTGACTACAACGAG-- 837031 Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146 || | || | | || ||||| ||| |||| ||| | || | || || || Sbjct 837032 -GGCTGCTACGACTTCAAGAAGCTTCACGAAGTCACCAAGGTGGTCGTCCGCAACCTCAA 837090 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||| |||| || || || ||||| || || || || || ||||| || Sbjct 837091 CCGCATCATCGATGTGAACCACTACCCCGTCCAGGAGGCTCGCAACAGCAACATGCGCCA 837150 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACG 76265 | ||||||| ||| | ||||| || || || || || | || | | ||| || | Sbjct 837151 CCGACCTATCGGTGTCGGTGTCCAGGGCCTTGCTGACGCGTTCCTCGCTCTGCGTCTGC- 837209 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | ||||| || || || ||| |||| | ||||| || ||||| || || | Sbjct 837210 CCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTCGAGACCATTTACCATG 837269 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | |||| || || || | || | | | | || ||||||| | || ||| Sbjct 837270 CCGCCCTTGAAGCTTCCATGGAGATTGCCAAGGTCGAGGGCCCCTATGAATCGTTCAAGG 837329 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-C 76444 | || || || || | || | || |||| || ||||||| | || || || || | Sbjct 837330 GATCGCCTGCATCTGAGGGTATCCTCCAGTACGACATGTGGG-ACGTCAAGCC---CTCC 837385 Query 76445 AAC---TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 || | || ||||| |||||||| | ||||||||| | ||| | || ||||| Sbjct 837386 GACCTGTGGGAGTGGGACTCCCTCAAGGAGCAGATCAAGGAGCACGGTGTCCGCAACAG- 837444 Query 76502 CTT--TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 ||| ||| | || || ||||| || ||| ||| | || ||| |||| || || |||| Sbjct 837445 CTTGCTTG-TCGCTCCTATGCCCACTGCCAGTACCTCTCAGATCCTGGGCAACAACGAAT 837503 Query 76560 GCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCA 76619 |||| || || ||||| | |||||||||| | || | ||| || |||||||| Sbjct 837504 GCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAGTTCCAGG 837563 Query 76620 TTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGA 76679 |||||||| || |||| ||||| | | || || |||||| | | |||| Sbjct 837564 TTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTGTGGTCCGACGCCATGA 837623 Query 76680 AGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATA 76739 || | | ||| | | | || ||||| || || || | | ||||| || || | Sbjct 837624 AGAACCGCATCATTGCCGAGAACGGCTCCATCCAGAACATTCCCAACATCCCCGAGGACA 837683 Query 76740 TCAAGAATCTCTACCGCACAGTGTGGGAAA----TCAAGATGAAAGATGTCATTGACATG 76795 ||||| || ||| || || ||||| | ||| | ||| |||| | ||| Sbjct 837684 TCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCAGCGTCAAA-TTGTC---CAGATG 837739 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAA 76853 || || ||||||||| ||||| || | |||| ||| | || | |||| | Sbjct 837740 GCGGCTGATCGTGGTGCTTTCATCGACC--AGTCCCAGTCCCTCAACATCCACATGAAGG 837797 Query 76854 GTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAA 76913 || |||||| |||| | | ||||| | || ||||| | || ||||| | Sbjct 837798 ACCCCACGATGGGCAAGATTACCAGCATGCACTTCACCGGCTGGAAGCTCGGTCTCAAGA 837857 Query 76914 CCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCCTTGA 76971 |||| |||||||| ||||| | |||| ||| || || ||||||| | |||| Sbjct 837858 CCGGCATGTACTACCTCCGTACCCAGGCCGCAGCTGCGCCTATCCAGTTCACCGTTGA 837915 >seq86 Length=1711676 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | |||| |||| ||||| ||| |||| Sbjct 1358161 AAGAAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAACTCG-TCCTTTGCCCAGCG 1358219 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| |||| ||||| ||| ||||| ||||||||| ||| | || | | || | Sbjct 1358220 CCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTT 1358279 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| ||||| ||| || || || || || || || Sbjct 1358280 CTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCG 1358339 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || |||||||| ||| ||| |||||| Sbjct 1358340 TGACGAGGGTCTGCACACGGACTTTGCC 1358367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568354660960