Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq137 239 6e-58 seq140 196 6e-45 seq135 149 8e-31 seq35 111 2e-19 >seq137 Length=1488176 Score = 239 bits (264), Expect = 6e-58 Identities = 548/823 (67%), Gaps = 9/823 (1%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| || || || | ||||| || || ||||| || |||||||| ||||| | || Sbjct 1204428 GCTCTCCGCCGTCTCCGCACTGCCTGCGAGCGTGCTAAGCGAACTCTGTCTTCGTCTGCC 1204487 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || | ||||||| || || ||| || || || |||| ||| || | || || Sbjct 1204488 CAGACCTCGATTGAGATCGACTCCCTGTACGAGGGTATCGACTACTACACCTCCATCACT 1204547 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | ||| | || | || | || || || Sbjct 1204548 CGTGCCCGTTTCGAGGAGCTGTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 1204607 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| || || ||||| || |||||| |||| | || || ||||| || || Sbjct 1204608 CGTGTCCTTGCCGATGCCAAGATCGACAAGTCTCAGGTCCACGAGATCGTCCTCGTCGGT 1204667 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 || || ||||||||||| || || || | | | || |||||| || || Sbjct 1204668 GGCTCCACCCGTATTCCCCGCATCCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAG 1204727 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || || || || ||||| ||||| ||||| || Sbjct 1204728 CCCAACAAGTCCATCAACCCCGATGAGGCTGTCGCCTACGGTGCCGCCGTCCAGGCCGCC 1204787 Query 196421 ATTCTCTCAGGTGTTGACAATAATAACGTCCA------AGATCTTCTGCTACTTGATGTT 196474 || || || |||| || | || ||||| ||||| ||||| || ||||| Sbjct 1204788 ATCCTGTCTGGTGACACCACTTCCAA-GTCCACCAACGAGATC--CTGCTTCTCGATGTC 1204844 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 || ||| | || || ||| | || || || ||||| | ||||| || | || | Sbjct 1204845 GCTCCCCTGTCTCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCCGC 1204904 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || || || || |||||| | ||||| || || | ||||| || || || Sbjct 1204905 AACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCT 1204964 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | || || || || || || || ||| || | ||||| ||| | || || Sbjct 1204965 GGTGTGCTCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTGCTC 1205024 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | ||||| | || || || || |||| || | |||||||| ||||| | || Sbjct 1205025 GGCAAGTTCGAGCTTACCGGCATCCCCCCTGCGCCTCGTGGTGTTCCCCAGATCGAGGTC 1205084 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 |||||| | || || || || || | |||||| | || | || |||| ||||| Sbjct 1205085 ACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCTGCCGTCGAGAAGGGCACTGGC 1205144 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || || | |||||||| || ||||| |||||||| || || || |||||||| ||||| Sbjct 1205145 AAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTGAG 1205204 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || ||| | || || || ||||||| ||| || ||||||| Sbjct 1205205 CGCATGCTGTCTGACGCCGAGAAGTACAAGGAGGAGGACGAGG 1205247 Score = 224 bits (248), Expect = 1e-53 Identities = 464/684 (68%), Gaps = 5/684 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| |||||||| || ||| | | | | || || ||| || Sbjct 1203609 GGTATCGACCTGGGTACTACCTACTCATGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 1203667 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 1203668 TATCATCGCCAACGACCAGGGCAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGACAC 1203727 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 1203728 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 1203787 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | ||||| |||||||| | || | ||||| | ||| || Sbjct 1203788 CTTCGACGCCAAGCGGTTGATTGGCCGCAAGTTCGCCGACCCTGAGGTCCAGGCCGACAT 1203847 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | || ||||| | || | ||||| Sbjct 1203848 GAAGCACTTCCCCT-TCAAGGTCATCGACAAGAA-CTCC-AAGCCCGTCATCGAGGTTGA 1203904 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| || | ||||| || || || || ||||| ||| || Sbjct 1203905 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCTGACCAA 1203964 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || | | | | |||| || || || | || || | || || Sbjct 1203965 GATGCGTGAGACCGCCGAGGCCTACCTTGGTACCACCGTCAACAACGCCGTCATCACCGT 1204024 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 1204025 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGG 1204084 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 || ||| || | || ||||| || || || || ||||| || || || || || || Sbjct 1204085 CCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGCCTTGA 1204144 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||||| || | || || || | ||||| ||||||||||||||||| || || Sbjct 1204145 CAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGTGGTGGTACCTTCGA 1204204 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 ||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| || Sbjct 1204205 TGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 1204264 Query 195964 TCATCTAGGTGGTGAAGATTTCGA 195987 ||| | |||||||| || ||||| Sbjct 1204265 TCACTTGGGTGGTGAGGACTTCGA 1204288 >seq140 Length=1272624 Score = 196 bits (216), Expect = 6e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| |||||||| Sbjct 763528 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 763469 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||||| || || ||||| |||||||| || || ||| Sbjct 763468 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 763409 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || |||||||| ||||| || |||||| | || |||||| Sbjct 763408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAAC 763349 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| ||||| | ||||| |||||| Sbjct 763348 ATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTTCGTGGTGGT 763301 Score = 187 bits (206), Expect = 3e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || || || || ||||| |||||||||||||| || ||||| ||||| Sbjct 763230 GTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 763171 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| ||||| || || || ||||| || || || Sbjct 763170 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATC 763111 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || |||||||| || || || |||||| | || |||||| |||| |||||| Sbjct 763110 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 763051 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || |||||||| || | ||||| |||||| Sbjct 763050 TCTACACTCCACCTTGTCCTCCGTCTTCGCGGTGGT 763015 Score = 152 bits (168), Expect = 7e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || || || || || || || ||||| || || || | Sbjct 762791 GTGGTATGCAGATCTTTGTCAAGACACTGACGGGTAAGACGATTACCCTGGAAGTGGAAT 762732 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || || ||| |||| | |||||||| || ||||| || || || || | Sbjct 762731 CATCTGATACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTG 762672 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | |||||||||||||| ||||| ||||| || |||||||| || | Sbjct 762671 ACCAGCAGCGCTTGATTTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACT 762612 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||| ||||| ||||| ||||| | || || ||||| Sbjct 762611 ACAACATCCAGAAGGAGAGCACTCTGCACCTGGTTCTCCGTCTCCGTGGTGG 762560 >seq135 Length=1177387 Score = 149 bits (164), Expect = 8e-31 Identities = 506/779 (65%), Gaps = 17/779 (2%) Strand=Plus/Minus Query 195663 AGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| ||| || | | | ||| | || ||| | | || || | || Sbjct 783452 AGATGAAGGAGATTGCCGAGACCAAGCTTGGCAAGAAGGTTGAGA-AGGCTGTCATCACC 783394 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || || ||||| || ||||| |||| ||| || || Sbjct 783393 GTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATCGCT 783334 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | || ||||| || || || || ||||| || || || |||||| Sbjct 783333 GGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATCGCCTACGGTCTG 783274 Query 195842 GACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 | |||| ||| | || || || |||||| ||||| ||||||||||| Sbjct 783273 GGTGCCGGCAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACC 783214 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || |||||||| || || || || | |||||| | ||| || |||||||| || ||| Sbjct 783213 TTCGATGTCTCCCTCCTGAACATCCAGGGTGGTGTCTTCACTGTCAAGGCTACCGCCGGT 783154 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAG 196018 || || || | ||||| | || ||||| | || ||| || | | ||| Sbjct 783153 GACACCCACTTGGGTGGCCAGGACTTCGACACCAACCTGCTCGACCACTGCAAGAAGGAG 783094 Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGGCTTA 196076 ||| ||| |||| ||||| | | | | || | || | ||||| || | || Sbjct 783093 TTCACTCGCAAGACCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTGCGAAGACTCC 783036 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTTGA 196134 | ||||| || || |||||||| || || ||||| | || || || | | |||| Sbjct 783035 GCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCATTGA 782978 Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGA 196194 |||||| || | || || || |||||| | || || |||||||| ||||| || Sbjct 782977 GATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCCGTGCTCGTTTCGA 782918 Query 196195 AGAGTTAAACTCTGATTTGTT--TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 ||| | ||| | | || || | | || ||||||| || || || Sbjct 782917 GGAGCTCAACGCCAAGGCCTTCGCCGGCA--CCCTCGAGCCTGTTGCCCAGGTCCTCAAG 782860 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| || || ||| ||||| || |||||||| || || || || |||||| Sbjct 782859 GACGCCGCCATTGAGAAGAGCGCCGTTGACGAGATTGTCCTCGTCGGTGGTTCTACCCGT 782800 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 ||||| ||||| || || | || || |||||| || || | | | || | Sbjct 782799 ATTCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGATGGCAAGAAGCTCGAGAAGAGC 782740 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||||| ||||| || || || || ||||| ||||| ||||| | ||| ||||| || Sbjct 782739 ATCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCTCCGG 782681 >seq35 Length=1408159 Score = 111 bits (122), Expect = 2e-19 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || |||||||| || |||||||| | | | || || || || ||| ||| |||| || Sbjct 294733 CAGCGACAGGCCACCAAGGACGCCGGTACCATCGCCGGCCTGAACGTTCTCCGAATCGTC 294674 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || || || |||||||||||||||| | | | | || | Sbjct 294673 AACGAGCCCACCGCCGCCGCTATCGCCTATGGTCTGGACAAGACCGACGGTG-AGCGCCA 294615 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||| ||||||||||| |||||||| || || || ||||| Sbjct 294614 GAT-CATTG-TCTACGATCTTGGTGGTGGTACCTTTGATGTTTCTCTCCTGTCCATTGAC 294557 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 294556 AATGGCGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 294497 Query 195986 GA 195987 || Sbjct 294496 GA 294495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861026712240