Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq135 147 6e-30 seq86 145 2e-29 >seq135 Length=1177387 Score = 147 bits (162), Expect = 6e-30 Identities = 198/273 (73%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||| |||||||| ||||| || || ||| || || || Sbjct 770367 TCTTCCAGAGCCTTGACCAGACGTCGCTGAATGTAACCTGTCTCAGCTGTCTTGACGGCC 770426 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-G 302690 |||||||| ||||| |||||||| |||| || |||||||| | ||| ||| |||| | Sbjct 770427 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGTCGG-CGTAAG 770485 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | | || |||| ||||| ||||| |||||||| || | ||| |||||| Sbjct 770486 GCCACGCAGATACGAATTCTCCACGAAGCCACGGGCCTCGGGTGAGTAATCGTCCTTGGT 770545 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||| || || || |||| | | |||| | || ||||||||||| || || |||| Sbjct 770546 AAAATGGGGGAGTGTCCGATATTTGAAGCCAAACGGAATACGCTTTCCTTCGACAATCTG 770605 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| | || ||||||| ||||| || Sbjct 770606 CTGTCCCACGAGCGCTGTCATCTGAGAAATGTT 770638 Score = 111 bits (122), Expect = 5e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| ||||||||| ||||| || ||||| ||||||||||||||||| | | | Sbjct 452915 TGAGCGATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGATGATGTCGGGCGTGATT 452856 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||||| ||||| |||| | | | ||| || |||||||| |||||||| Sbjct 452855 CCCTCTCTGGTGAACGGCATGTCCTCCTGC-CGGTAAGTGACACCAATAGTGCCCTTTTG 452797 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||| ||||| |||||||| Sbjct 452796 TCCGTGACGAGAAGCAAACTTGTCACCAAT 452767 Score = 84.2 bits (92), Expect = 6e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || ||||||| |||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct 453269 GCTCCGTGTGCAATCATGCAATCACGCTCCATTTCTCCGAATCGGAGACCACCGTCTCGG 453210 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570 || | |||||| | ||||| || || Sbjct 453209 GCACGACCCTCCACCGGCTGTCGCGT 453184 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 || ||||| | | |||||| ||||| | || ||||| |||||| | ||||||||| Sbjct 769590 AGGATTTCCTTGAGACGGGGCACACCGAGCGTGACGTT---CTTGGAGGACACACCAGCA 769646 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||||||| || |||||||| | || |||| |||||||| || || ||||| | Sbjct 769647 AAGTGGAAGGTGTTCAGAGTCATCTGCGTAGCAGGCTCACCGATGGACTGAGCCGCGAGG 769706 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| |||||||| || || Sbjct 769707 ACACCCACCATTTCACCGGG 769726 >seq86 Length=1711676 Score = 145 bits (160), Expect = 2e-29 Identities = 246/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 1358015 CCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGT 1358074 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || || || || ||||||||||| || | |||| || | || ||||||| Sbjct 1358075 ACTCCCTGCTCATCGACACTTACATCAAGGAGCACAGCCAGCGCAACTACCTCTTCAACG 1358134 Query 133425 CCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || ||||||| ||| ||||| | |||||||| ||| |||||||||| Sbjct 1358135 CCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAG 1358193 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| || ||||| || |||||||| ||||| | || |||||||| || Sbjct 1358194 GACAAGAACTCGTCCTTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTC 1358253 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| ||||| || ||| || || ||||| || ||||| ||| | | || || ||| Sbjct 1358254 TTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTG 1358313 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||||| ||||| || || || | ||||||| || ||||| || |||||| Sbjct 1358314 ACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCC 1358367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814450770279