Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq138 174 2e-37 seq86 141 1e-27 seq121 120 4e-21 seq145 107 2e-17 seq120 104 3e-16 seq98 102 1e-15 seq136 86.0 8e-11 >seq138 Length=1076999 Score = 174 bits (192), Expect = 2e-37 Identities = 331/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| | | ||||||||| Sbjct 836518 CTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGA 836459 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | ||||| ||| | ||| || | ||| || || || Sbjct 836458 GGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAAACC 836399 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || ||| || || ||||| ||||| ||||| Sbjct 836398 GATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 836339 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||||||||| | ||||| || || || | |||| || || Sbjct 836338 AATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACC 836279 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| || || | || |||||| |||| | |||||| || ||| || Sbjct 836278 AGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGT 836219 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 |||| || ||| || | |||| | || || ||| | ||| || Sbjct 836218 CTCGAGGACACGC------------TCAATGTCGTC---TCCCCAGATGCCAACGGCCAC 836174 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| ||||||||||| | |||| | ||| ||||| || Sbjct 836173 TCGCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGA 836114 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || || ||| ||| ||||||||| || || || ||||||| | |||||| Sbjct 836113 TCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 836054 Query 1630545 GGCGTCGAG 1630553 || |||||| Sbjct 836053 GGAGTCGAG 836045 Score = 125 bits (138), Expect = 9e-23 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||| | ||| || |||||||| || |||||| |||| |||||| | ||||||||| Sbjct 332462 GCCTCCAATTTCCTGGATATCAAGCCCCTTCTCGATGTTGGCTGCAAGACCGTGGCCAAC 332521 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct 332522 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACTTTCAACAT 332568 Score = 100 bits (110), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| |||| || |||||||| || ||||| || || || |||||||||| ||| || | Sbjct 837192 AACGCGTCAGCAAGGCCCTGGACACCGACACCGATAGGTCGGTGGCGCATGTTGCTGTTG 837133 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACG 1627983 || ||||| | || ||||||||||| | ||||| | |||||||||||||| || || Sbjct 837132 CGAGCCTCCTGGACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTGCGGACGACC 837073 Query 1627984 ACCTGGACGATCTCGTGCAG 1628003 |||| | || ||||| || Sbjct 837072 ACCTTGGTGACTTCGTGAAG 837053 >seq86 Length=1711676 Score = 141 bits (156), Expect = 1e-27 Identities = 211/291 (73%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| |||||||||||||| || ||||| Sbjct 1358349 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTT 1358290 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||||| | | || || ||| ||| |||||||||||||| |||||| Sbjct 1358289 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGCGGCA 1358232 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 ||| | | ||| |||| ||||||| | |||| | |||| | |||||| ||| Sbjct 1358231 AAGGCAACGAGGCGCTGGGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGAATC 1358178 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 |||||||||||||| || | | | || | || || |||||| ||||||| || Sbjct 1358177 GCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTG 1358118 Query 869414 TTTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | | ||||||| || |||||||| || || || || ||||| Sbjct 1358117 CGCT-GGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTC 1358068 Score = 134 bits (148), Expect = 2e-25 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| |||||| |||||||||||||| | || || || Sbjct 1358663 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATG 1358604 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| || |||||| ||| || ||||| | | Sbjct 1358603 TTCTCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCATTGCCGAGGGCAACC 1358544 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||||||||| |||||||| |||||||| ||||||| || ||||||||| | Sbjct 1358543 AGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGC 1358484 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| ||| |||||| | |||||| |||||| ||| |||| Sbjct 1358483 AGGGCGCAAGGCAGAGCCTCGGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATG 1358424 Query 868931 AT 868932 || Sbjct 1358423 AT 1358422 Score = 118 bits (130), Expect = 1e-20 Identities = 178/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | ||| Sbjct 1358066 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGG 1358007 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || ||||||||||| || |||||||| ||||||||| Sbjct 1358006 ACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAG 1357947 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 || ||||||| ||| ||| |||| |||||| ||| | | ||| ||||| | Sbjct 1357946 AAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCG 1357887 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | ||||| | ||| ||||||||||||| || ||||||||||||||| Sbjct 1357886 TGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTG 1357827 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 1357826 TACATTTGCCA 1357816 >seq121 Length=1616592 Score = 120 bits (132), Expect = 4e-21 Identities = 253/369 (69%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGAT 92662 |||||||| || ||| ||| || | ||| | |||| ||| ||||||||| |||| Sbjct 414671 GGCGATCTCCTTGGTAAGGCGCTCTTGGATCTGTAGGCGGCGGGAGAACATGTCGGCGAT 414730 Query 92663 GCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTT 92722 |||||| | |||| | |||||||| | |||| | |||||| | ||| |||| Sbjct 414731 GCGCGGCAGCTTGGAGATGCCGATGACGGCGTTGTTGGGGATGTAGCCGATGTGCACCTT 414790 Query 92723 GCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGAT 92782 ||| | ||||||| ||| ||||||||||| | |||||| | ||||| || |||| Sbjct 414791 GCCGGTGAAGGGCACCAGGTGGTGCTCGCAGAGGGAGAAGATGTCGATGTTCTTGACGAC 414850 Query 92783 CACCATCTCGCCCGAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGT 92839 |||||||| | |||| || | | ||| ||| | ||||| ||| | ||| Sbjct 414851 AACCATCTCAGAGTGGCCCTCCTGGAAGATGGCGCCGTTGACGATG---TCGAAGA-CGT 414906 Query 92840 CATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCA 92898 ||| || ||| ||||| || |||||||||||| ||| |||||| ||| Sbjct 414907 TCTGCTCGTAGCCCTGCGTGAAGGTCATCATGGCCTTGGCATATCGCTCGGGCGTGGCCA 414966 Query 92899 GGAGGCCCTCGCGCCGCACG-TCCTCGCCCAGGCAGGCCAGCAGCGTCCTCGTGGCGTCG 92957 | |||||||| || |||| | |||||||| | ||| | ||||||||| | |||| | Sbjct 414967 GCAGGCCCTCTCG-CGCAGGATCCTCGCCGACGCACTCGAGCAGCGTCTTGACGGCGCCC 415025 Query 92958 GCCATGCGC 92966 ||||||| Sbjct 415026 TTCATGCGC 415034 >seq145 Length=1412916 Score = 107 bits (118), Expect = 2e-17 Identities = 260/384 (68%), Gaps = 15/384 (4%) Strand=Plus/Minus Query 1726694 GCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGAA 1726752 ||||| |||| | ||| || | || || |||| | ||| |||||||| ||||||||||| Sbjct 1072646 GCGGCAGCGCCAATGGCATCAA-TGGCGACGCCGAGGCTGCCGTCGGTTCCGTTCTTGAA 1072588 Query 1726753 GCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCG 1726812 ||| | || | | ||| | || || | ||| ||||||| ||| ||||||||| || Sbjct 1072587 GCCCACGGGGAAGGACAGGCCGGAAGCGAGCTCACGGTGCAGCTGCGACTCGGTCGTTCG 1072528 Query 1726813 CGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA-GGACT 1726869 |||||| | |||||| | | ||| || | || |||| ||| || | Sbjct 1072527 CGCGCCAATGGCGCCGACGGAGATGCAGTCGGCGAGGAACTGGGGGG----AGATGGTGT 1072472 Query 1726870 -GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGC 1726928 ||| | |||| ||| | |||| || || | | | || ||| || || |||| Sbjct 1072471 CGAGCATCTCGGTGGCAATGGGCATGCCGTTGGAG--GTC-AGGTCGACGAAGAGCCGGC 1072415 Query 1726929 GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCA 1726988 | || | |||||| | | | || | ||| ||||| ||||| ||| || || Sbjct 1072414 GGGAGACGCGCAGGCCCTTGTTGATCTGGAAGGACGAGTCGATATCGGGATCGTTGATCA 1072355 Query 1726989 GGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAA 1727048 |||||||||| |||||||||||||| ||||| || | ||||| ||||| || | ||| | Sbjct 1072354 GGCCCTTCCAGCCGACGGTCGTGCGAGGCTTCTCCAGGTAGGCTCGCATCACGATGCAGA 1072295 Query 1727049 GCGCGTCGCCGACCTCGTCTCGGA 1727072 | ||||| ||| || ||||||| Sbjct 1072294 GGTCGTCGGCGAGCT--TCTCGGA 1072273 >seq120 Length=420891 Score = 104 bits (114), Expect = 3e-16 Identities = 239/348 (69%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 1726698 CGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTC-CCGTCGGTGCCGTTCTTGAAGCCG 1726756 |||||| || ||| |||| || ||||| || || |||||||||||||||||||| Sbjct 241139 CGGCGCCCATGGCATCGATCGCAA-CGCCAAGCGAACCATCGGTGCCGTTCTTGAAGCCA 241197 Query 1726757 ATGGCCAGCGGCAGTGCCGAC--GCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCG 1726814 | || | || || || |||| ||||||||||| |||||||||||||||||||| Sbjct 241198 ACGGGGAAACTCAA--CCCACTGGCCAGCTCGCGGTGCAGCTGGCTCTCGGTCGTGCGCG 241255 Query 1726815 CGCCCACGGCGCCCCACGC-CACCAGGTCTGCCAAATAAGGGGCCACCAGAGGACTGAGA 1726873 |||| | |||| || |||| || ||| || ||||| | ||| | | | || Sbjct 241256 CGCCAATGGCG-CCGACGCTCAGCAGATCAGCCAAGAACTGGGGAGAGATGGTATCCAGC 241314 Query 1726874 AACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGCGCGAC 1726933 | |||| || | |||| || | || | || ||| || || |||||||| Sbjct 241315 ATCTCGCTCGCAATGGGC--ATGCCCTTGCTCGTC-AGGTCGACAAAGAGCTGGCGCGAC 241371 Query 1726934 -GCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 1726992 |||| |||||| | | | | | ||||| | ||| |||||| || ||||| Sbjct 241372 AGCCG-CAGGCCCTTGTTGATCTTGAAGCTGCCGTCAATGTCCGGGTCGTTGATGAGGCC 241430 Query 1726993 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGAC 1727040 |||||| ||||| |||||||||||||| |||| || | |||||||| Sbjct 241431 CTTCCAGCCGACCGTCGTGCGCGGCTTCTCGAGGTACGACCGCATGAC 241478 >seq98 Length=45380 Score = 102 bits (112), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| ||||||||||| || || Sbjct 37260 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAAAAGTATGGCATCAAGGCCTCCTCC 37201 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| |||||||||||| | ||||||||||| ||||| || ||| Sbjct 37200 GGCGGCGGCCGGAGCAGCGCCCGCGAGACCATTGCCCGCGTCGCCGCTGGCGCTGTTGCC 37141 Query 18478 GAGAAATGGCT 18488 || || ||||| Sbjct 37140 GAAAAGTGGCT 37130 Score = 100 bits (110), Expect = 3e-15 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 |||||||||||||| |||||||| ||| | ||||| ||||||||||||||| |||| Sbjct 36837 GGCCTCGGCGAGCCCTGCTTTGATAAGCTTGAGGCTCTCCTCGCCCACGCCATGATGTCT 36778 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 ||||| || |||||||| || ||||||||| Sbjct 36777 ATCCCTGCTACCAAGGGCTTTGAGATTGGC 36748 >seq136 Length=386613 Score = 86.0 bits (94), Expect = 8e-11 Identities = 176/256 (69%), Gaps = 22/256 (9%) Strand=Plus/Plus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGC-GCGCC 96712 ||||||||||||||||| |||||||| || || ||||||| || |||| ||||| Sbjct 237908 GCCGAGAACCTCATGATTGTCGACCTCGTCCGGCACGACCTATACGGCGTCTGCGGCGCC 237967 Query 96713 CGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCA 96772 | ||| |||| ||||||| | | ||| | || | ||| |||| | ||| Sbjct 237968 C-GCAACGTCACCGTGCCG---GATCTCCTCAAGG---TGGAGGACTACTCGAGCGTCTT 238020 Query 96773 CCAGATGGTGACCACCGTCGACGGCCTG-----CTCGAC--CGCG------GCCGGACGG 96819 ||||||| | ||| |||| |||||| | |||| | |||| ||| |||| Sbjct 238021 CCAGATGATCACCGTCGTCAACGGCCAGCTGCCCTCGTCGTCGCGCGCCGCGCCCAACGG 238080 Query 96820 CGCTCGACCTCGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGC 96879 ||||||| | | ||| ||| | ||||| ||| |||||||||||||||||| || Sbjct 238081 -GCTCGACGTGCTCGCCGCCGCCCTGCCGCCCGGCAGCATGACGGGCGCGCCCAAGAAGC 238139 Query 96880 GCAGCATGGAGATTCT 96895 ||||| ||||| || Sbjct 238140 GCAGCTGCGAGATCCT 238155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125495197939