Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq86 178 2e-38 seq138 170 3e-36 seq121 116 6e-20 seq108 111 2e-18 >seq86 Length=1711676 Score = 178 bits (196), Expect = 2e-38 Identities = 239/331 (72%), Gaps = 9/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| |||||||||||||| || ||||| Sbjct 1358349 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTT 1358290 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||||| || || || || ||| |||||||||||||| ||||| Sbjct 1358289 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATGCCCTCGACAGCGGC 1358233 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | ||||| |||| |||||| | | | || | | |||||| ||||| Sbjct 1358232 AAAGGCAACGAGGCGCTGGGCAAAGGA---CGAGTTCTTGTCCTGGATCCATCGAATCGC 1358176 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || |||||| ||||||| || Sbjct 1358175 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 1358116 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | ||||||| ||| ||||||||||| || ||||| ||||| ||||||||||| Sbjct 1358115 CTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTT 1358056 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||||||| || |||||| Sbjct 1358055 CTCCATCATGATCTGGAAGCCGTAGAAGCAG 1358025 Score = 127 bits (140), Expect = 3e-23 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| |||||| |||||||||||||| | | Sbjct 1358671 TGACACCGGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 1358612 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || ||||||| || | ||| |||||| |||| Sbjct 1358611 GGGAAATGTTCTCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCATTGCCGA 1358552 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||| || || ||||||||||| ||||||| || ||||| Sbjct 1358551 GGGCAACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCA 1358492 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| | |||| | | |||||| | |||||| |||||| | Sbjct 1358491 TGCCCAGCAGGGCGCAAGGCAGAGCCTCGGTCAAAAACTCCTGCTCGATGCGGACGGCGT 1358432 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 1358431 CGGTGATGAT 1358422 Score = 118 bits (130), Expect = 2e-20 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | |||||||| ||||||| || |||||||||| || |||||| Sbjct 1358021 GCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCG 1357962 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 || ||||||||| ||||| |||| ||| ||| |||| |||||| ||| | || Sbjct 1357961 TCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGG 1357902 Query 796269 CGA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | | ||| | ||||| | ||| ||||||||||| ||||| Sbjct 1357901 CGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAA 1357842 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||||||||||||||| | ||| ||| ||||| Sbjct 1357841 GCCTCGGCCTTTTTGTACATTTGCCAGATCTGTTGG 1357806 >seq138 Length=1076999 Score = 170 bits (188), Expect = 3e-36 Identities = 339/504 (67%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| | || ||||||||| Sbjct 836518 CTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGA 836459 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | ||||| ||| | ||| || | ||| || || || Sbjct 836458 GGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAAACC 836399 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || ||| | ||||| || || ||||| ||||| Sbjct 836398 GATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 836339 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||||| || ||||| || || || | ||| || || Sbjct 836338 AATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACC 836279 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||||||||||| || || | || ||| | ||| ||||||| | ||| || Sbjct 836278 AGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGT 836219 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || ||| | | ||||| || || ||| | ||| || Sbjct 836218 CTCGAGGACACGCTCAATGTCGTCT---------------CCCCAGATGCCAACGGCCAC 836174 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956 ||||||||||||| ||| || |||||||| | | ||||| | ||| ||||| Sbjct 836173 TCGCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCG---AGCTTCAGAAGGTA 836117 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || || ||| ||| | ||||||||| |||| | ||| || |||| | ||| Sbjct 836116 TGATCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGAT 836057 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||||| |||||| |||||||||| Sbjct 836056 GGCGGAGTCGAGCTCCTCCTTGTG 836033 Score = 122 bits (134), Expect = 1e-21 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| | ||| || ||||||||||| |||||| | || |||||||||||||||||| Sbjct 332462 GCCTCCAATTTCCTGGATATCAAGCCCCTTCTCGATGTTGGCTGCAAGACCGTGGCCAAC 332521 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| |||||||| || |||||||| || ||||| Sbjct 332522 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACTTTCAACAT 332568 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 |||||||| || |||||||| || ||||| || || || |||||||||| ||| || Sbjct 837192 AACGCGTCAGCAAGGCCCTGGACACCGACACCGATAGGTCGGTGGCGCATGTTGCTGTTG 837133 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 || ||||| | || ||||||||||| | ||||| | ||||||||||||| Sbjct 837132 CGAGCCTCCTGGACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTG 837082 >seq121 Length=1616592 Score = 116 bits (128), Expect = 6e-20 Identities = 277/416 (67%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 118618 TCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGC 118677 |||| |||| |||||||| || ||||| |||| | ||| | ||||| |||||| Sbjct 414580 TCTTCTGCACACCGCGCATCACCATGCACAGGTGGCTGGACTCTATGACGACAGCGACGC 414639 Query 118678 CGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCA 118737 | | | | | ||| ||| ||| | |||||||| || || ||| || | Sbjct 414640 CCTGGGGCCGCAGGACGTCGAAGATTGCGTTGGCGATCTCCTTGGTAAGGCGCTCTTGGA 414699 Query 118738 CCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCC 118797 ||| | |||| |||| ||||||| |||||||||| | |||| | |||||||| Sbjct 414700 TCTGTAGGCGGCGGGAGAACATGTCGGCGATGCGCGGCAGCTTGGAGATGCCGATGACGG 414759 Query 118798 TGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGC 118857 | ||| | |||||| | |||| |||||||| | ||||||| ||| |||||||||| Sbjct 414760 CGTTGTTGGGGATGTAGCCGATGTGCACCTTGCCGGTGAAGGGCACCAGGTGGTGCTCGC 414819 Query 118858 ACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCTC-GCCCGACGTCTCGGCAAAG 118916 | | |||||| | ||| |||| ||| |||||||| | | | ||| ||| Sbjct 414820 AGAGGGAGAAGATGTCGATGTTCTTGACGACAACCATCTCAGAGTGGC-CCTCCTGGAAG 414878 Query 118917 AGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATG 118976 | |||| || |||| ||| | | || | || ||| ||||| || |||| Sbjct 414879 ATGGCGCCGTTGACGATGTCGAAGACGTTCTGCTCGTAGCCCTGCGTGAAGGTCATCATG 414938 Query 118977 GCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCC 119032 |||||||| ||| ||||||| ||| |||||||| ||||| |||||||| Sbjct 414939 GCCTTGGCATATCGCTCGGGCGTGGCCAGCAGGCCCTCTCGCGCAGGATCCTCGCC 414994 >seq108 Length=122642 Score = 111 bits (122), Expect = 2e-18 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 20064 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCACCCGGCAG 20005 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| || |||| ||||||||||| |||| ||| ||| |||||| || | Sbjct 20004 GATCAGTCGGACGGATGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 19946 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | ||||| | ||||||||| | | ||| |||| ||||| Sbjct 19945 CGGCCAGCTTGGAAGCCTCGGTGGCAACGCGCTCGAAGATGTC 19903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916228635448313