Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq86 122 8e-23 seq140 89.7 5e-13 >seq86 Length=1711676 Score = 122 bits (134), Expect = 8e-23 Identities = 341/515 (66%), Gaps = 29/515 (6%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| ||||||| |||||| | ||||| || |||||| || | ||| | | | Sbjct 1358149 CCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCC 1358208 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTT 46880 | ||| ||||| | || || || || ||||| ||| | || || || ||| Sbjct 1358209 TTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTT 1358268 Query 46881 GCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAG 46940 ||| |||| || | | || | ||| | ||||| |||||||| || |||||| Sbjct 1358269 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAG 1358328 Query 46941 TTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC--- 46991 | ||||| || ||||| || || |||||||||||||| || || || | || Sbjct 1358329 CTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCACCTG 1358388 Query 46992 AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGC 47050 |||| |||| | | || ||| ||| | ||| ||| | | || || Sbjct 1358389 AAGAACCGCGCCA----GCAA--------GGAGGTGATTCGTGA-CATCATCACCGACGC 1358435 Query 47051 GGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAA 47110 || ||||||| |||||||||| || | ||| ||||| |||| ||||||||||||| Sbjct 1358436 CGTCCGCATCGAGCAGGAGTTTTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAA 1358495 Query 47111 CGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 47169 | | || || ||| | || ||||||||||| || || || ||| |||| |||| Sbjct 1358496 CTC-CAACCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCG 1358554 Query 47170 GACAACCGAAATATTTTAATGCTCGT--AATCCGTTTGAGTTTATGAACAACATTTCGCT 47227 | ||| || | | || |||| || || ||||| |||||| | |||||||| || Sbjct 1358555 G-CAA-TGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCT 1358612 Query 47228 CGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262 | ||||| ||||| || |||||||| || |||| Sbjct 1358613 GGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 1358647 >seq140 Length=1272624 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||| || || |||||||||||||||| ||| Sbjct 72850 ACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 72909 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| | |||| || ||||| || || || || ||||| Sbjct 72910 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 72969 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 72970 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 73029 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 73030 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 73071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610205074120