Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq86 257 2e-62 seq138 194 2e-43 seq121 107 3e-17 >seq86 Length=1711676 Score = 257 bits (284), Expect = 2e-62 Identities = 395/550 (72%), Gaps = 19/550 (3%) Strand=Plus/Plus Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828 ||| | ||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 1357806 CCAACAGATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGA 1357864 Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGG--GTGTCG-CTGAGCGACGACGAGCGCCATT 1455885 | ||||| | ||| | | ||||| || |||| ||| |||||| | | Sbjct 1357865 TTGACCTGTCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACT 1357924 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||| |||| ||| || ||||||||| || ||||| || |||||||||| Sbjct 1357925 TCATCTCTCACATCCTGGCC-TTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTG 1357983 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | |||||||| | || ||||| || | || ||||| |||||| Sbjct 1357984 GTCGAGCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAG 1358043 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || || ||||| || || |||||||| ||| ||||| Sbjct 1358044 ATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTACATCAAG 1358103 Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 || | | || || ||||||| |||||| || || | || | | | || Sbjct 1358104 GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAG 1358163 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||||||||||| |||||| ||||| | |||| | ||||||| ||| Sbjct 1358164 AAGGCCGACTGGGCGATTCGATGGATCCAGGACAAGAA----CTCGTC-CTTTGCCCAGC 1358218 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCAT 1456239 | ||||| | ||||||||| |||||||||||||| ||| ||| || || | | |||| Sbjct 1358219 GCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGC--CTCCAT 1358276 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 ||| |||||||||||||| || ||||||||||| | | |||| |||||| | ||| Sbjct 1358277 CTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGG-CCTGACCTTTTCCAACGAGCTCATCT 1358335 Query 1456300 GTCGCGACGA 1456309 ||| ||||| Sbjct 1358336 CTCGTGACGA 1358345 Score = 122 bits (134), Expect = 1e-21 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| |||||| | |||||| | | |||| | ||||| || Sbjct 1358422 ATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAGGCTCTGCCTTGCGCC 1358481 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| | |||||| ||||||||||| ||| || |||||||||| Sbjct 1358482 CTGCTGGGCATGAACTCCAAC-CTCATGAAGCAGTACATTGAGTTT-GTTGCCGACCGCC 1358539 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | ||||| ||| | || ||||||| || | ||| Sbjct 1358540 TGCTGGTTGCCCTCGGCAATG-AGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATG 1358598 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| || || || | |||||||||||||| |||||| ||||| | ||| ||| Sbjct 1358599 GAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAG 1358658 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 1358659 AAGGCCGGTGTCA 1358671 >seq138 Length=1076999 Score = 194 bits (214), Expect = 2e-43 Identities = 349/503 (69%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| |||||| | |||||| | ||| ||||||||| |||| |||||| Sbjct 836033 CACAAGGAGGAGCTCGACTCCGCCATCGTCTACGACCGAGACTTCAACTACCAATACTTT 836092 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | ||| || || || ||||| | ||| || || | | |||||||| Sbjct 836093 GGCTTCAAGACGCTGGAGCGATCATACCTT-CTGAAGCTCGACGGCAAGATTGTCGAGCG 836151 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 ||| ||| | ||| ||||||| || ||| ||||| | |||| || | ||||| Sbjct 836152 GCCACAGCACATGATCATGCGAGTGGCCGTTGGCA--TCTGGG------GA-GACGACAT 836202 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 || ||| || |||| || ||| | |||||| ||||| ||| |||||| | Sbjct 836203 TG------AGCGTGTCCTCGAGACATACCACCTCATGTC-CAGCAAGTTCTTCACCCACG 836255 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | || || ||||| ||||| || || |||| | ||| || || ||||| || Sbjct 836256 CCTCCCCTACCCTCTTCAATGCTGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGG 836315 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 |||||||||||| || || ||||| ||||||||||| || ||| ||| || | | Sbjct 836316 TGGACATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGA 836375 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| ||| || || |||||||| || ||| | || ||| | ||| ||| Sbjct 836376 TCTCCAAGATGGCTGGTGGTATCGGTTTGAACGTCCACCGCATCCGTGCCACTGGCTCCT 836435 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||||||| ||||||||| || | |||||||| || || || ||| Sbjct 836436 ACATCGCCGGCACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACA 836495 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || || |||||||||||| Sbjct 836496 ACACTGCCCGATACGTCGACCAG 836518 Score = 89.7 bits (98), Expect = 7e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 262104 CCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCA 262163 ||||| | | |||||| | ||||||||| | |||| |||| ||||||||||| | || Sbjct 836829 CCATTCTGGAGGCCCAGACCGAGACCGGTAACCCCTTCATGCTCTACAAGGACCACTGCA 836888 Query 262164 ACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGAG 262222 ||| | ||||||||| ||||| ||||||||| | ||| | ||||| ||||||||| Sbjct 836889 ACCGCAAGAGCAACCAGAAGAACTTGGGCACCATCCGCAG-CTCTAACCTCTGCACCGAG 836947 Query 262223 ATC 262225 ||| Sbjct 836948 ATC 836950 >seq121 Length=1616592 Score = 107 bits (118), Expect = 3e-17 Identities = 225/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 2133386 GCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGA 2133445 ||||||| | |||| | ||| |||| | ||| | ||||||||| |||| || Sbjct 415034 GCGCATGAAGGGCGCCGTCAAGACGCTGCTCGAGTGCGTCGGCGAGGATCCTGCGCGAGA 414975 Query 2133446 GGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCA 2133505 |||||| |||| ||| ||| ||| |||||||||||| || ||||| ||| | Sbjct 414974 GGGCCTGCTGGCCACGCCCGAGCGATATGCCAAGGCCATGATGACCTTCACGCAGGGCTA 414915 Query 2133506 TC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGAC-GAG 2133563 ||| || | | |||| |||| ||||||| |||| | |||| | | | ||| Sbjct 414914 CGAGCA-GAACGTCTTCGACATCGTCAACGGCGCCATCTTCCAGGAGG-GCCACTCTGAG 414857 Query 2133564 ATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTT 2133623 ||||| || | || ||| | |||||| | ||||||||||||||| ||||||| Sbjct 414856 ATGGTTGTCGTCAAGAACATCGACATCTTCTCCCTCTGCGAGCACCACCTGGTGCCCTTC 414797 Query 2133624 ATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATC 2133683 | |||||||| ||| | |||||| | ||| | ||||||| | |||| | Sbjct 414796 ACCGGCAAGGTGCACATCGGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGCTG 414737 Query 2133684 CCGCGCATCGTCGACATGTTTTCCGACCGC 2133713 |||||||||| ||||||||| ||| |||| Sbjct 414736 CCGCGCATCGCCGACATGTTCTCCCGCCGC 414707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177795092543054