Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq86 89.7 7e-13 >seq86 Length=1711676 Score = 89.7 bits (98), Expect = 7e-13 Identities = 360/561 (64%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || ||||| || | | || | ||||| ||||| || || Sbjct 1358370 GCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAG 1358311 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||| ||||| |||||||| || |||| ||||| | || ||||| Sbjct 1358310 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAA 1358251 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG-TATCATTATG 39792 |||||| || || || ||||| ||||| || | || | | || | | | | || Sbjct 1358250 GATGCCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTG 1358191 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| ||||| || || ||||| | ||||| || || || || || || Sbjct 1358190 GATCCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 1358131 Query 39853 AAAGAGATAATGTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||||| || ||| | | || || || | || || || || | ||| || Sbjct 1358130 GAAGAGGTA--GTTGCGC-TGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTA 1358074 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | | || || |||||||| || ||| ||||| || ||||| || || | || || | Sbjct 1358073 CGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGG 1358014 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| || ||||| | || | || ||| || || || || || || || || Sbjct 1358013 AATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGC 1357954 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATT 40086 ||| || || |||| | || || || || || || || ||| || || Sbjct 1357953 GGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTT 1357894 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| | | || || || | || | ||||| || ||||| || || ||||| || Sbjct 1357893 CCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGC 1357834 Query 40147 CTTTTTGTACATGTTCCATAT 40167 |||||||||||| | ||| || Sbjct 1357833 CTTTTTGTACATTTGCCAGAT 1357813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907366077880