Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq138 118 3e-21 seq86 116 1e-20 >seq138 Length=1076999 Score = 118 bits (130), Expect = 3e-21 Identities = 363/547 (66%), Gaps = 26/547 (5%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | || || ||||||||| || || |||||||| || || || Sbjct 836464 CGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCCCGATACGTCGACCAGGGTGG 836523 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC--ATTGAA 255088 | ||| || || || || ||| |||||||||| ||||| |||||||||||| || | Sbjct 836524 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTTGA 836583 Query 255089 CGGTTTTTACTGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145 | || || | |||| ||||| ||||| |||||| | |||||||||| | Sbjct 836584 C----TTCCTTGATCTCCG-CAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGACTTG 836638 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA----GAC 255201 | | ||| | ||| | |||||| || || || ||||| ||||| || | Sbjct 836639 TTCCTTGCTCTGTGGATCCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACTTGGA 836694 Query 255202 CTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTT 255261 ||||| |||||||| |||||| || || || || | |||| | || || ||||| Sbjct 836695 CTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTACGGCGAGGAGTT 836754 Query 255262 TGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGA 255320 ||| ||||| |||||||| | | || || | ||||| | | | | | || Sbjct 836755 TGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGTCGTAAGACCA-TTCGTGCTC 836813 Query 255321 AGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGC 255380 ||||| | ||| || | || || ||| || ||||| | || ||| | | Sbjct 836814 AGAAGCTGTGGTACTCCATTCTGGAGGCCCAGACCGAGACCGGTAACCCCTTCATGCTCT 836873 Query 255381 ACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCG 255439 |||| |||||| || |||| | | ||||| || || || || ||| |||| Sbjct 836874 ACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACTTGGGCACCATCCGCAGCTCT 836932 Query 255440 AACCTGTGCACCGAGATTACGTTGCACAC-GT-CAGCGCAAGAGGTGGCCGTTTGCAACT 255497 ||||| ||||||||||| | ||| || || | | | ||||| ||||| ||||||| Sbjct 836933 AACCTCTGCACCGAGAT--CATTGAGTACTGTGCCCCCGACGAGGTCGCCGTCTGCAACT 836990 Query 255498 TGGCGTC 255504 |||| || Sbjct 836991 TGGCCTC 836997 >seq86 Length=1711676 Score = 116 bits (128), Expect = 1e-20 Identities = 358/540 (66%), Gaps = 19/540 (4%) Strand=Plus/Plus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| || |||||||| || ||||||||| || ||| |||||| | || || Sbjct 1357846 TTCTGGACCGCCGAAGAGATTGACCTGTCCAAGGACCTGCACGACTGGAACAACCGCCTG 1357905 Query 443397 TCTAGCCATGAACGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| || || | ||||| | |||| |||||||||| || | || Sbjct 1357906 ---AACGATGA-CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGA 1357961 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGC 443512 ||| || ||| ||||| ||||| ||| ||| || ||| | ||||||| Sbjct 1357962 CGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGC 1358021 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 |||| |||||||| ||||| | ||||||||||| ||| ||||| ||| | Sbjct 1358022 TCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCCCT 1358081 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCA 443631 | | ||| |||||| | | || || || ||||| | | ||| || || || Sbjct 1358082 GCTCATC--GACACTTACATC-AAGGAGCACAGCCAGCGCAACTACCTCTTCAACGC-CA 1358137 Query 443632 T---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 | ||||| || |||| | ||| | |||||| | | ||| || | || Sbjct 1358138 TTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCGATTCGATGGATCCAG-GAC 1358196 Query 443689 AAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || | ||| | || | | |||| || || || ||||| | ||||| || | || || Sbjct 1358197 AAGAACTCGTCCTTTGCCCAGCGCCTCGTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTC 1358256 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 ||||| |||| ||||||||||||||| | || ||||| || || |||| ||| ||||| Sbjct 1358257 AGCGGTGCCTTT-GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGAC 1358315 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 |||| ||||| || ||| ||| ||||||||| |||| ||||| ||||| || || Sbjct 1358316 CTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCT 1358375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588332601457315