Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq138 244 1e-59 seq86 96.9 4e-15 >seq138 Length=1076999 Score = 244 bits (270), Expect = 1e-59 Identities = 1169/1822 (64%), Gaps = 67/1822 (4%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | ||||| || | ||||| | Sbjct 837876 CGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTA 837817 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| |||||| || | |||| || ||| | ||| |||| |||| |||| Sbjct 837816 ATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACT--GGTCGATGA 837759 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTG 110537 | || || | |||||||| | |||| | || | || ||||| || | Sbjct 837758 AAGCACCACGATCAGCCGCCATCTG---GACAATTTGACGCTGAGAAATCTCCCAGACGG 837702 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCG 110597 | || || |||||| || || ||||| | | || ||||||||||| || | Sbjct 837701 TCTTGTACAGGGCCTTGATGTCCTCGGGGATGTTGGGAATGTTCTGGATGGAGCCGTTCT 837642 Query 110598 CCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA 110657 | | ||| | | |||||| | | |||||| || || | | ||||| |||| Sbjct 837641 CGGCAATGATGCGGTTCTTCATGGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGA 837582 Query 110658 CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717 || |||||||| |||||||| || ||| | || | |||||||||| | Sbjct 837581 GAAGCCAGGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGG 837522 Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||| || || |||||||| || || |||| ||| || | ||| ||| || |||| Sbjct 837521 AAGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCA 837462 Query 110778 TTGGTGCCATCAA--AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 | || || | ||| ||| ||||| || | ||| | ||||||||| | |||||||| Sbjct 837461 TAGGAGCGA-CAAGCAAG-CTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGA 837404 Query 110836 ATCCCAGTCGTA---GTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCC 110891 ||||| || | || | || || || || | |||||||||| |||| || | | Sbjct 837403 GTCCCACTCCCACAGGTCGGAG---GGCTTGACGT-CCCACATGTCGTACTGGAGGATAC 837348 Query 110892 CTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCAC 110951 | | || || || || |||| || | |||||||| || | | | | || | || Sbjct 837347 CCTCAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCA 837288 Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 | || || |||| || || || ||||| || ||||| | |||| ||| | Sbjct 837287 TGGAAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAG 837228 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACA 111070 | || || ||||| | | || ||| | | || | || || || || || ||| Sbjct 837227 CCTCGGGAGACTCAAAGG-GCAGACGCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACA 837169 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAA 111130 || | ||| ||||||| ||| ||||| || || || || || ||||| || Sbjct 837168 CCGACACCGATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACGGGGTAGTGG 837109 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || || |||| ||||| || || | || | ||| |||| ||| ||||| || Sbjct 837108 TTCACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTC 837049 Query 111191 TCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTGATGCC 111247 | | || | || ||| | | | ||| | |||||||| | || ||| Sbjct 837048 TTGAAGTCGTAGCAGCC---CTCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCC 836992 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || ||||| || || ||| || | |||||| | || || || || | ||| Sbjct 836991 AAGTTGCAGACGGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTA 836932 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 || || || || ||||| ||||| ||||| ||||| |||||| ||||||||| Sbjct 836931 GAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAG 836872 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCG 111427 |||||| |||| | || ||||| ||||| | | ||||| | | ||| | || Sbjct 836871 AGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACA-----GCT 836817 Query 111428 GCTG-GTAC-AATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 111482 ||| | || ||||| || | || ||||||||| |||||||||| ||| || || | Sbjct 836816 TCTGAGCACGAATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCT 836757 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGAC 111541 |||||||||| || ||| | || || || || || || || || | || | | Sbjct 836756 CAAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTC 836698 Query 111542 CATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAA 111598 || | ||| ||| ||| || ||||||||||| || || || |||||||| | | | | Sbjct 836697 CAGT--CCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGA 836640 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | || || | ||| |||| || | || ||||| || | |||||||| || Sbjct 836639 ACAAG-TCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCA 836581 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 | || || |||||||| ||||| || |||| |||| | || ||||| Sbjct 836580 AAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAG---GACGCTTGTTG 836524 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | || || || || ||| ||| || || || ||||| || ||||| || Sbjct 836523 CCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCG 836464 Query 111773 TCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGGATGT 111830 | || || || || || ||| || ||| | |||| | | |||| || Sbjct 836463 TTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGT 836406 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 || || ||||| |||||| ||| ||||| |||||| | | ||||| |||||| Sbjct 836405 TCAAACCGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGA 836346 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 |||| | || ||| ||||| || | | | |||||| ||||| ||| | | | Sbjct 836345 TACCCTCAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCG 836286 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTT 112008 | |||||||||||||||||||| || | ||||| ||| | | |||| |||||| Sbjct 836285 GGGTACCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAG 836228 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||||||||| | |||| |||||||| || || |||||| | || || ||||| Sbjct 836227 GTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCAT 836168 Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCT 112127 || ||||| |||||| || | | |||| |||||| |||| || | || || Sbjct 836167 GATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGATC-GCT 836109 Query 112128 CAAGGGTTTTGAGACCAAAGTA 112149 | || || |||| |||||||| Sbjct 836108 CCAGCGTCTTGAAGCCAAAGTA 836087 >seq86 Length=1711676 Score = 96.9 bits (106), Expect = 4e-15 Identities = 342/523 (65%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || || ||| || || Sbjct 1358367 GGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 1358308 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 1358307 GGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 1358248 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 ||||| ||| ||||| |||| ||||| | ||| ||||| |||| ||| | | | Sbjct 1358247 GCCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGA 1358189 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 |||| || ||||| | |||||||| ||| || || | || | ||||| | | Sbjct 1358188 TCCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 1358129 Query 122897 ATAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTT 122955 | | | | | | | | | ||||| ||||| |||| || | || || || Sbjct 1358128 AGAGGTAGTTGCGCTGGCTGTGC-TCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTC 1358070 Query 122956 TCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 123014 ||| || | | | ||| ||| | || | ||||||| |||| || ||| || Sbjct 1358069 TCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGAGCCTCGGGAAT 1358011 Query 123015 CTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 123073 ||| ||||| |||| || | | | ||||| ||||| || || || | | Sbjct 1358010 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGG 1357952 Query 123074 CAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCC 123130 | ||||| |||||||||| ||||| | ||| || | || |||| || | |||| Sbjct 1357951 CGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 1357892 Query 123131 AGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||||| || || ||||||| |||| ||||| || ||||| Sbjct 1357891 AGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 1357849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030688983200