Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq138 239 6e-58 seq86 120 4e-22 >seq138 Length=1076999 Score = 239 bits (264), Expect = 6e-58 Identities = 1112/1737 (64%), Gaps = 65/1737 (4%) Strand=Plus/Minus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| || || || ||||| | |||||||||||||| || ||| Sbjct 837915 TCAACGGTGAACTGGATAGGCGCAGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGTC 837856 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| || |||||||| | | ||||| || | |||| | || || Sbjct 837855 TTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATCGTGGGGTCC 837796 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || ||| | ||||| || |||||||| || ||||| |||||||| Sbjct 837795 TTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCAGCCGCCATC 837736 Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 | | || || || | ||| | ||||| || ||| |||| ||| ||| || || Sbjct 837735 TGGA-CA-AT--TTGACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTC 837680 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093 || ||||| | || || |||||||| || | | | ||| | | |||||| Sbjct 837679 CTCGGGGATGTTGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTCTTCAT 837620 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150 | | ||||| || || | | || |||| |||| || |||||||| Sbjct 837619 GGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 837563 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 |||||||| || ||| |||| | | ||||| |||| ||||| ||||| ||||| Sbjct 837562 CTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCA 837503 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 || ||||| |||| ||| || | || ||| |||||||| || || | || | ||| Sbjct 837502 TTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACAAGCAAGCT 837443 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTTG-A 118326 ||| |||| ||| | ||| | || | |||||||| | |||||| || | || | | Sbjct 837442 GTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGGA 837383 Query 118327 GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 118386 | | || | | |||||| || ||||||||||||| | || || |||||||||| Sbjct 837382 G----GGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGGCGATCCCT 837327 Query 118387 CAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 118446 || | ||||| |||||||| |||| || | || | || || ||||| || | Sbjct 837326 TGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAGGGCGGCAT 837267 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 | || || || || || || | |||| | |||||| || ||||| | | Sbjct 837266 GGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCA 837207 Query 118507 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 118565 | || || | | || | || || || || |||||||||| || || || || || Sbjct 837206 GACG-CAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGATAGGTCGGTGG 837148 Query 118566 CTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 118625 | ||| || || ||||| || ||||| || ||| |||||| | | || Sbjct 837147 CGCATGTTGCTGTTGCGAGCCTCCTGGACGGGGTAGTGGTTCACATCGATGATGCGGTTG 837088 Query 118626 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC 118685 || || | ||| ||||| |||| ||| |||||||| | | | || | | || | Sbjct 837087 AGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGCAGCC---C 837031 Query 118686 TCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCA 118742 || | | | ||| | |||||||| | || |||| || || || | | ||| Sbjct 837030 TCGTTGTAGTCAACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGACGGCGACCTCG 836971 Query 118743 TCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAG 118802 || || |||||| || || || ||||| | ||| || || |||||||||||| Sbjct 836970 TCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAG 836911 Query 118803 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 118862 ||||| || || ||| ||| || |||||||| |||||| | || | || ||| Sbjct 836910 TTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTACCGGTC 836851 Query 118863 TCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG-GCAC-AGTGGCGTTGG 118920 || || |||| || ||||| | | ||| | || ||| |||| | ||| || Sbjct 836850 TCGGTCTGGGCCTCCAGAATGGAGTACCACA-----GCTTCTGAGCACGAATGGTCTTAC 836796 Query 118921 ---CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCT 118977 | || ||||| |||||||||| ||| || || |||||||| || || | | Sbjct 836795 GACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAGT 836736 Query 118978 CTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAA 119034 | | || || || || || |||| || | ||| | ||| | ||| || ||| | Sbjct 836735 CAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCGA 836679 Query 119035 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 119094 | |||||||||||||| || |||||||| || || ||| | || || |||| | | Sbjct 836678 CACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGCGCGAACCT 836619 Query 119095 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 119154 | || | || || || || | || | ||||| | || || |||||||| || | Sbjct 836618 CCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCT 836559 Query 119155 CCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCG 119208 | ||||| | |||| | || | |||| ||| |||||| || || | | Sbjct 836558 CGAGGTAGATGGCGAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTATCGGG 836502 Query 119209 CAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCC 119267 ||||| ||| || || || ||||| || || || || | ||| ||| || || || Sbjct 836501 CAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCCGG 836442 Query 119268 CGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 119326 ||| || ||| | | |||| | || ||||| || || ||| ||||| || ||| Sbjct 836441 CGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGTTCAAACCGATACCACCAGCCAT 836384 Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386 ||| ||||| || ||| | | ||| || | ||||| || || || |||| |||| Sbjct 836383 CTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTT 836324 Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAG 119445 | | | | |||||| |||| || ||| || || |||||||| |||||||| | Sbjct 836323 CATGTCCACCAAGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCATTGAAGAGGG 836265 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 | || | |||||| ||| | | |||| |||||| || ||| ||||| | ||| Sbjct 836264 TAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTGGTATGTCTCGAGGAC 836210 >seq86 Length=1711676 Score = 120 bits (132), Expect = 4e-22 Identities = 347/523 (66%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 1358367 GGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 1358308 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 1358307 GGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 1358248 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAA 130193 ||||| ||| || || |||| ||| |||| |||||||| || | |||| | | Sbjct 1358247 GCCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGA 1358189 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| |||||||| | ||||| || || || || | ||||| || || | | Sbjct 1358188 TCCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 1358129 Query 130254 AGAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 |||| | || | | || | || |||||||| | || ||||| || || || Sbjct 1358128 AGAGGTAGTTGCGCT-GGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTC 1358070 Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 ||| |||| | | ||| || | ||| | ||||||| |||| || ||| || Sbjct 1358069 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAAT 1358011 Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| ||||| | || || | | | ||||| ||||| || || || | | Sbjct 1358010 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGG 1357952 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487 | || || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 1357951 CGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 1357892 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| || ||||| || || || | ||| || || ||||| Sbjct 1357891 AGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 1357849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433909016520