Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq140 147 7e-30 seq137 96.9 1e-14 seq135 86.0 2e-11 >seq140 Length=1272624 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||| |||||||| || || || || || || Sbjct 763298 CATACCACCACGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTC 763357 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 763358 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGG 763417 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 763418 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTC 763477 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 763478 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 763528 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || || |||||||| || ||||| || || || Sbjct 763012 CATACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTC 763071 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 763072 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGG 763131 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | ||||| | || Sbjct 763132 AGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTC 763191 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||| ||||| || || || || Sbjct 763192 AACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGAC 763230 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||| || ||||| || || || Sbjct 762784 CATACCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 762843 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || ||||| || || || ||||| || || || || ||||| || || Sbjct 762844 GCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGG 762903 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | |||||||| || Sbjct 762904 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTC 762963 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | |||||||| || || || || || ||||||||||| Sbjct 762964 GACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 >seq137 Length=1488176 Score = 96.9 bits (106), Expect = 1e-14 Identities = 216/323 (67%), Gaps = 1/323 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || ||||||| || || || || || Sbjct 1204011 GCCGTCATCACCGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 1204070 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || || Sbjct 1204071 GGTCTCATTGCCGGCCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATC 1204130 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 1204131 GCCTACGGCCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGT 1204190 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 1204191 GGTGGTACCTTCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 1204250 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| || || || || || ||||| || || || Sbjct 1204251 ACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTC 1204310 Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932 || || || || ||||| ||||| Sbjct 1204311 GTCAACGAGTTCAAGCG-CAAGC 1204332 >seq135 Length=1177387 Score = 86.0 bits (94), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | ||||||||||||||||| || || Sbjct 769605 CGGGGCACACCGAGCGTGACGTTC---TTGGAGGACACACCAGCAAAGTGGAAGGTGTTC 769661 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || |||| |||||||| || ||||| || || | || || |||||||| Sbjct 769662 AGAGTCATCTGCGTAGCAGGCTCACCGATGGACTGAGCCGCGAGGACACCCACCATTTCA 769721 Query 377578 CCAGGATTGACAA 377590 || || ||||||| Sbjct 769722 CCGGGGTTGACAA 769734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251157829101