Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq138 282 5e-71 seq86 131 2e-25 seq137 100 3e-16 >seq138 Length=1076999 Score = 282 bits (312), Expect = 5e-71 Identities = 421/593 (71%), Gaps = 6/593 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | || ||| || |||||| |||||||| ||||| ||| Sbjct 836166 TCATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTCGAGACATACC 836225 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || |||||| | || ||||| ||||| |||||||| Sbjct 836226 ACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCTACCCTCTTCAATGCTGGTACCC 836285 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| |||| |||||| |||||| |||||||||||| || || || | Sbjct 836286 CGCAAGCCCAGCTGTCCTCATGCTTCTTGGTGGACATGAAGGATGACAGCATTGAGGGTA 836345 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || || ||| ||||||| ||||||||| | | |||||||||||| | Sbjct 836346 TCTATGACACTCTGAAGACGTGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGTTTGA 836405 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | || ||||||| | ||| | ||| || || |||||| | || | Sbjct 836406 ACG--TCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAACGGCACCTCCAA 836463 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || |||||||||||||| ||||| |||||| |||||||||| Sbjct 836464 CGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCCCGATACGTCGACCAGGGTGG 836523 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | |||||||||||||||||||| |||||||||||| | | || Sbjct 836524 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTTGA 836583 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 || || || || || ||| || || | || ||| | ||| ||| ||| |||| Sbjct 836584 CTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGACTTGTTCCT 836643 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||||||||| || || ||||||||| | || |||||| || ||| ||| || Sbjct 836644 TGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACTTGGACTGGACGCT 836703 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||| ||||| ||||| |||| | | | || |||||| ||||||||| Sbjct 836704 CATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTG-CTACGGCGAGGAGTTT 836755 Score = 136 bits (150), Expect = 4e-27 Identities = 306/452 (68%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | |||| || || || ||||| || || || |||||||| |||||||| Sbjct 837437 CGCAACAGCTTGCTTGTCGCTCCTATGCCCACTGCCAGTACCTCTCAGATCCTGGGCAAC 837496 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| |||||||| ||||| |||||||||||| ||| || ||| || |||||| Sbjct 837497 AACGAATGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAG 837556 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC-C 55662 || | ||||| || ||||||||||| | | | | |||| | | Sbjct 837557 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTGTGGTCCGAC 837616 Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGAT 55716 || || |||| || || |||| |||||| ||| ||||||| || | || Sbjct 837617 GCC-ATGAAGAACCGCATCATTGCCGAGAACGGC---TCCATCCAGAACATTCCCAACAT 837672 Query 55717 TCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 || | |||||| | ||| ||| || ||||||||| | ||| ||| || Sbjct 837673 CCCCGAGGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCAGC---GTCAAAT 837729 Query 55777 TGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || | ||| |||||||||||||| | |||||||||||||||||| || |||||| Sbjct 837730 TGTCCAGATGGCGGCTGATCGTGGTGCTTTCATCGACCAGTCCCAGTCCCTCAACATCCA 837789 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | || | ||| |||| | | | |||||||| ||| |||||| || Sbjct 837790 CATGAAGGACCCCACGATGGGCAAGATTACCAGCATGCACTTCACCGGCTGGAAGCTCGG 837849 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||| || |||||||| || || |||| Sbjct 837850 TCTCAAGACCGGCATGTACTACCTCCGTACCC 837881 >seq86 Length=1711676 Score = 131 bits (144), Expect = 2e-25 Identities = 551/846 (65%), Gaps = 48/846 (6%) Strand=Plus/Minus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| ||||| || || ||||||||||| || ||| || ||||||||||| |||| | Sbjct 1358647 CGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAA 1358588 Query 74530 AAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCG 74586 | ||||| | ||| | |||||| || | ||| ||||| || | Sbjct 1358587 AGGGGTTGGACGACTTGTACAC---CTTCTCATTGCCGAGGGCAACCAGCAGGCGGTCGG 1358531 Query 74587 CCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCA 74646 | ||||| | |||||||||| |||| | | |||||| | || ||| |||| Sbjct 1358530 CAACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAAGGCA 1358471 Query 74647 GTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTTGTGAATG 74705 | |||||||| | |||||| ||| | || | | | | || || | |||| Sbjct 1358470 GAGCCTCGGTCAAAAACTCCTGCTCGATG-CGGACGGCGTCGGTGATGATGTCACGAATC 1358412 Query 74706 ---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTG 74761 || ||| | || || | |||||||||||| ||| | || |||||| ||| Sbjct 1358411 ACCTCCTTGCTGGCGCGGTTCT---TCAGGTGAGAGTGCAGCAGGCA-GGCAAAGTCCGT 1358356 Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 ||| || || || | || | || || ||||| | ||||| ||||| || || Sbjct 1358355 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1358296 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 |||||||| | ||| ||||||| |||| ||| |||||||||||||| |||||| Sbjct 1358295 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGC 1358236 Query 74882 CGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCAT---CGGAAGTCATCCAAGTCT 74934 |||||||| || ||||| || || || | || | | | | | |||| || || Sbjct 1358235 GGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAA-TC- 1358178 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGG--C 74991 ||||| || || ||| | || || ||| | || || || || | ||||||| Sbjct 1358177 --GCCCAGTCGGC-CTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 1358121 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 |||| | || | | ||||||| | |||| || | || ||||||||||| || | Sbjct 1358120 TTGCGCTGGCT--GTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGT 1358063 Query 75052 GAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 | || ||| | | |||| | ||||||| | || ||||| | |||||| || | Sbjct 1358062 GGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCT 1358003 Query 75112 --CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 || |||| || | | | ||||| |||| |||||||||||||||||||| || Sbjct 1358002 CGCCGCTGAAGCGCTC--GACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAA 1357945 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGC---TCATCG-TCAGTGAGTTTGTCCCAATCCT 75225 ||||| | ||| |||| | |||||| |||| | | |||| ||| || | Sbjct 1357944 GGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCCAGTCGT 1357886 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTT 75282 ||||||| | || |||||||| ||| | |||||||| | || || ||||||| Sbjct 1357885 GCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCC---TCGGCCTTTT 1357829 Query 75283 TGTACA 75288 |||||| Sbjct 1357828 TGTACA 1357823 >seq137 Length=1488176 Score = 100 bits (110), Expect = 3e-16 Identities = 224/331 (68%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || ||||||||||| |||||| ||||| ||||| ||||||||||||| ||||||| Sbjct 662413 AGACCCTTGATATGACTACCGTCATGATCCTGATCGGCCATGATCATCAGGTGGCCGTAG 662472 Query 118073 CGTAAATCTC-TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 || || ||| || | | || |||| || | ||| || |||| || || | Sbjct 662473 CG-AAGGCTCTTCGTGTCCGTGTACACCTGCTTGTGCTTGAGACCCAGGAACTGCTTGAT 662531 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 ||| || || | ||||| || | ||| | |||| ||||| || |||||| || | Sbjct 662532 GTTCTGAATCTCTTGATTTTTGGTGATCTGGTCAATGGATGCGTCTCGCACGTTGAGCAG 662591 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTCAAGCCGGCAA 118250 |||||| || |||||||| || || | |||| || ||| | |||| || | | Sbjct 662592 CTTACCACGGAGTGGAAAGACACCGATTCGGTCAGGGTCCAGGATGGCTC-GTCCAGACA 662650 Query 118251 TAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGAT 118310 || || | || || |||||||| ||||| | || || ||||||||| || ||| Sbjct 662651 CGGCCAGACCTTTGGCGGAGTCACCTTCGGTCAGGATGAGGGTGCACTCGTGGCCGCGCC 662710 Query 118311 GAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 | || || ||| || || || ||||||| Sbjct 662711 GGGTGCCTGCCAGGTTGGCCTCGACCAGCTT 662741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || || || |||| |||| ||| |||| || ||||| || | | Sbjct 661504 CCCGTGCCGATACCGTCGGCGCCATTGATGAGAACCATGGGCAGGATGGGGGCATACACC 661563 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTC-AGCCGG 151994 || ||||| | ||| | || || || | | || |||| || || ||| ||| | Sbjct 661564 TCGGGCTCAATCTGCTTTCCATCCTCGAACTGGTGCTTCAGGTTGGGATCGTCGAGC--G 661621 Query 151995 ATCGAATATCCGTCGAGT-CATA-GGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | |||| | | | | || | || || || || ||| |||| || | |||||| Sbjct 661622 A-CGAAAAGATGGAGCGGGCAAACGGGGACAGGCGGGTAAAGGTGTAACGAGGGCTGGCG 661680 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 || || |||||| || || || | ||||| | || ||||| || | ||||| | Sbjct 661681 GCGTCGGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTAGGCTCCAGCACGTTGATG 661740 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 ||||| | ||||| || | ||||||| | || || ||||||| |||||| Sbjct 661741 TTGTTCGATCCCACAAAGTCTTGAGCCAGGCCAATGATGGTCTGCTGCAGAGAGGCTTCA 661800 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| || || ||| | | | || ||| || |||| || | | ||||| |||| Sbjct 661801 CCGTGGTGGTAAGCAGTCAGTCCGGAGACGTAACCAGCCAGCTCCACAACCTTTTCGTCC 661860 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | || ||| ||||| ||| ||||| | |||||| ||||| Sbjct 661861 TTGACCACGTTTCGCTTGAAACATGCGTACAGCACCTTTCGCTG 661904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214857686600