Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13]
167 sequences; 32,472,817 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq138 367 1e-96
seq140 176 5e-39
seq162 131 2e-25
seq137 89.7 6e-13
>seq138
Length=1076999
Score = 367 bits (406), Expect = 1e-96
Identities = 1161/1769 (66%), Gaps = 73/1769 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| |||||||| || |||||||||| | ||||
Sbjct 837885 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGC 837826
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| | | ||| | | ||||||| || |||| |||||| || ||||| |||||
Sbjct 837825 ATGCTGGTAATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 837766
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCA 80210
||||||||| |||||||| |||||||| | | |||| ||| | | | ||| |||||
Sbjct 837765 TCGATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGACGCT-GAGAAATCTCCCA 837707
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| || | ||||| || |||| || | | | ||
Sbjct 837706 GACGGTCTTGTACAGGGCCTT--GATG-TCCTCGGGGATGTTGGGAATGTTCTGGATGGA 837650
Query 80268 ACCGTCCTTTACAATTTGATTT--TTCAATTCA-GACGTCCAGACACCAAGCTTGTG--- 80321
|||| || |||| ||| ||| |||| | |||| ||| || || |||
Sbjct 837649 GCCGTTCTCGGCAAT--GATGCGGTTC--TTCATGGCGTCG-GACCACAGGCCGGTGTCG 837595
Query 80322 --CAGATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGA 80376
||| || || | ||| | | ||| || | || |||| || || ||| ||
Sbjct 837594 ACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCAAGGACACGT 837538
Query 80377 CGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCC 80436
||| | || | ||| | |||||| ||||| || |||||||| || ||||||||||
Sbjct 837537 CGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAG 837478
Query 80437 GTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATA 80496
|| || || || ||||| || |||| | || || || | ||||||| ||||||
Sbjct 837477 GTACTGGCAGTGGGCATAGGAGCGACAAGCAAGCTGTTGCGGACACCGTGCTCCTTGATC 837418
Query 80497 TCCTC---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGT 80548
| ||| | | | || || || | || | ||| |||| |||||||||
Sbjct 837417 TGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGG----AGGGCT-TGACGTCCCACATGT 837363
Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608
||| ||| | ||| ||||| || || || || ||| ||||| || || ||||||||
Sbjct 837362 CGTACTGGAGGATACCCTCAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGA 837303
Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668
|||||| | ||| || | |||||| || || |||||| ||| |||| ||
Sbjct 837302 CCTTGGCAATCTCCATGGAAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCT 837243
Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728
|||||| |||| |||| || || || | || | || | |||| ||||||
Sbjct 837242 TGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAG 837183
Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCC 80787
| |||||||| || |||| |||| || ||||||||| |||| | | || ||||||
Sbjct 837182 CAAGGCCCTGGACACCGACACCGATAGGTCGGTGGCGCATGTTGCTGTTGC-GAGCCTCC 837124
Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847
| | ||||| ||| |||||||| |||||| |||||||| || ||| ||
Sbjct 837123 TGGACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTG 837064
Query 80848 ACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGG 80901
|| || ||||| |||| |||||| | | ||| | ||||| || ||||||
Sbjct 837063 ACTTCGTGAAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGCGGGAAGG 837004
Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATT 80958
||| || |||| ||||| ||||| ||||| || ||| | || |||| | |||
Sbjct 837003 GCCAGAGAGGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCA-CAGT--ACTCAATGATC 836947
Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018
|| ||||| | ||||| || || |||| ||| |||||||| |||| ||||
Sbjct 836946 TCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG 836887
Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078
|| |||||||||| |||| | ||| ||||||||||| ||| | || || |||| |
Sbjct 836886 CAGTGGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAG 836827
Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138
| ||| | || | || | ||| || || || | | ||||| ||
Sbjct 836826 TACCACAGCTTCTGAGCACGAATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCG 836767
Query 81139 TAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197
|| | || |||| | |||| | || |||| ||| | ||||| ||||| |||||
Sbjct 836766 TACAGAGCCTCAAACTCCTCGCCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTGGGGCA 836708
Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257
||| || |||||| || ||||| ||| ||||||||| || |||||||| ||
Sbjct 836707 CATGAGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAG 836648
Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317
|| ||||| ||||||| ||| ||||||| | || ||||| ||| | || ||
Sbjct 836647 AGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAG 836588
Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTT 81371
||||| | || ||| || ||||| ||||| || || | ||||| | || | |||
Sbjct 836587 GAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTT 836528
Query 81372 GCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431
| ||||||||||| |||||| |||||||| ||| || || |||| ||| |||||
Sbjct 836527 G---TTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGAT 836471
Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTG 81489
|| || | || ||||| || || |||| || || |||| || | | ||
Sbjct 836470 AATGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTG 836411
Query 81490 CTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549
|| || |||||| ||||| | | ||| || ||| |||||| |||| ||
Sbjct 836410 GACGTTCAA--ACCGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTG 836353
Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609
||||| || ||||| ||||| || | |||||||| | |||||| || |||| ||
Sbjct 836352 TCATAGATACCCTCAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCT-- 836295
Query 81610 GGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667
|||||| | | || |||||||| || || |||| ||||| |||| | | | |
Sbjct 836294 GGGCTTGCGGGGTACCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGG 836235
Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727
|||| |||| || || || ||| || ||| ||||| || || || | || |
Sbjct 836234 ACATGAGGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCA 836175
Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756
| ||||| | ||||| ||| ||| ||||
Sbjct 836174 CTCGCATGATCATGTGCTGTGGCCGCTCG 836146
>seq140
Length=1272624
Score = 176 bits (194), Expect = 5e-39
Identities = 179/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || || ||||| ||||| || || || || ||| |
Sbjct 762786 ATGCAGATCTTTGTCAAGACACTGACGGGTAAGACGATTACCCTGGAAGTGGAATCATCT 762727
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || | ||| | || ||||||||||||||||| || || || ||||||
Sbjct 762726 GATACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 762667
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | ||||||||||||||||| || || || | ||||||||| ||| ||||| ||
Sbjct 762666 CAGCGCTTGATTTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGC-GACTACAA 762608
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||||| || || || | ||||| || ||||| ||
Sbjct 762607 CATCCAGAAGGAGAGCACTCTGCACCTGGTTCTCCGTCTCCGTGGTGGCCA 762557
Score = 176 bits (194), Expect = 5e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 763531 ATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 763472
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| ||||| | || || |||||||||||||| ||||| || |||
Sbjct 763471 TCCGACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAC 763412
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||||||||| || || ||||| ||||| || ||||||| || ||||| | |||||
Sbjct 763411 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTAC 763352
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| || || ||||| || || | || ||||| |||||
Sbjct 763351 AACATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTTCGTGGTGG 763302
Score = 172 bits (190), Expect = 6e-38
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || ||||| ||||||||||| ||| | ||| |
Sbjct 763230 GTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 763171
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 763170 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATC 763111
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||| || ||||| | || ||||| | ||||| || | || |||||
Sbjct 763110 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 763051
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || || ||| | ||||||||||||||
Sbjct 763050 TCTACACTCCACCTTGTCCTCCGTCTTCGCGGTGG 763016
Score = 152 bits (168), Expect = 6e-32
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || || ||||| |||||| |
Sbjct 763014 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 762955
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| | || ||||||||||||||||| |||||||||||||||
Sbjct 762954 GATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGACCAG 762895
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || ||||| ||||||||||| || || || | || || || ||| ||||| ||
Sbjct 762894 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGC-GACTACAA 762836
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| ||| || || | ||| | ||||| || |||||
Sbjct 762835 CATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 762788
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 73071 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 73012
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 73011 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 72952
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || ||||| || ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 72951 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 72893
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| || || || ||| |||| || || |||||
Sbjct 72892 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 72845
>seq162
Length=142150
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| || ||||| || || |||||||| || || |||||||| ||||| || | ||
Sbjct 93638 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 93697
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| |
Sbjct 93698 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 93757
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||||||||| |||||||||| || ||||| | ||||| || |||| ||
Sbjct 93758 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 93817
Query 27594 GG 27595
||
Sbjct 93818 GG 93819
>seq137
Length=1488176
Score = 89.7 bits (98), Expect = 6e-13
Identities = 226/336 (67%), Gaps = 6/336 (2%)
Strand=Plus/Minus
Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCA-CAAGTCGCACGAGTGCACGCTTATTAT 31268
||||| | ||| |||||| ||| || |||| | | | ||||||||||| || || |
Sbjct 662741 AAGCTGGTCGAGGCCAACCTGGCAGGCACCCGGCGCGGC-CACGAGTGCACCCTCATCCT 662683
Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328
||||| |||||||| || || | || || | |||| ||| | || | |
Sbjct 662682 GACCGAAGGTGACTCCGCCAAAGGTCTGGCCGTGTCTGGAC-GAGCCATCCTGGACCCTG 662624
Query 31329 TGCGT-TCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTA 31387
|| |||| || ||||| ||||| || |||| || ||||| || ||||| ||| ||
Sbjct 662623 ACCGAATCGGTGTCTTTCCACTCCGTGGTAAGCTGCTCAACGTGCGAGACGCATCCATTG 662564
Query 31388 AACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG 31447
| ||| | || | ||| ||||| || ||| | || || |||| || || ||||
Sbjct 662563 ACCAGATCACCAAAAATCAAGAGATTCAGAACATCAAGCAGTTCCTGGGTCTCAAGCACA 662504
Query 31448 GCAAGGTATATAATT-CACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGAC 31506
|||| || | ||| |||| || || ||||| | ||| ||||| ||| ||||
Sbjct 662503 AGCAGGTGTACACGGACACGAAGAGCCTT-CGCTACGGCCACCTGATGATCATGGCCGAT 662445
Query 31507 GCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTC 31542
|||| ||||| ||||| |||||||||||| ||
Sbjct 662444 CAGGATCATGACGGTAGTCATATCAAGGGTCTTCTC 662409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309209477040
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