Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq138 367 1e-96 seq140 176 5e-39 seq162 131 2e-25 seq137 89.7 6e-13 >seq138 Length=1076999 Score = 367 bits (406), Expect = 1e-96 Identities = 1161/1769 (66%), Gaps = 73/1769 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 837885 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGC 837826 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | ||||||| || |||| |||||| || ||||| ||||| Sbjct 837825 ATGCTGGTAATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 837766 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCA 80210 ||||||||| |||||||| |||||||| | | |||| ||| | | | ||| ||||| Sbjct 837765 TCGATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGACGCT-GAGAAATCTCCCA 837707 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | ||||| || |||| || | | | || Sbjct 837706 GACGGTCTTGTACAGGGCCTT--GATG-TCCTCGGGGATGTTGGGAATGTTCTGGATGGA 837650 Query 80268 ACCGTCCTTTACAATTTGATTT--TTCAATTCA-GACGTCCAGACACCAAGCTTGTG--- 80321 |||| || |||| ||| ||| |||| | |||| ||| || || ||| Sbjct 837649 GCCGTTCTCGGCAAT--GATGCGGTTC--TTCATGGCGTCG-GACCACAGGCCGGTGTCG 837595 Query 80322 --CAGATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGA 80376 ||| || || | ||| | | ||| || | || |||| || || ||| || Sbjct 837594 ACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCAAGGACACGT 837538 Query 80377 CGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCC 80436 ||| | || | ||| | |||||| ||||| || |||||||| || |||||||||| Sbjct 837537 CGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAG 837478 Query 80437 GTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATA 80496 || || || || ||||| || |||| | || || || | ||||||| |||||| Sbjct 837477 GTACTGGCAGTGGGCATAGGAGCGACAAGCAAGCTGTTGCGGACACCGTGCTCCTTGATC 837418 Query 80497 TCCTC---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGT 80548 | ||| | | | || || || | || | ||| |||| ||||||||| Sbjct 837417 TGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGG----AGGGCT-TGACGTCCCACATGT 837363 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 ||| ||| | ||| ||||| || || || || ||| ||||| || || |||||||| Sbjct 837362 CGTACTGGAGGATACCCTCAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGA 837303 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 |||||| | ||| || | |||||| || || |||||| ||| |||| || Sbjct 837302 CCTTGGCAATCTCCATGGAAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCT 837243 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 |||||| |||| |||| || || || | || | || | |||| |||||| Sbjct 837242 TGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAG 837183 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCC 80787 | |||||||| || |||| |||| || ||||||||| |||| | | || |||||| Sbjct 837182 CAAGGCCCTGGACACCGACACCGATAGGTCGGTGGCGCATGTTGCTGTTGC-GAGCCTCC 837124 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | | ||||| ||| |||||||| |||||| |||||||| || ||| || Sbjct 837123 TGGACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTG 837064 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGG 80901 || || ||||| |||| |||||| | | ||| | ||||| || |||||| Sbjct 837063 ACTTCGTGAAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGCGGGAAGG 837004 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATT 80958 ||| || |||| ||||| ||||| ||||| || ||| | || |||| | ||| Sbjct 837003 GCCAGAGAGGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCA-CAGT--ACTCAATGATC 836947 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || ||||| | ||||| || || |||| ||| |||||||| |||| |||| Sbjct 836946 TCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG 836887 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 || |||||||||| |||| | ||| ||||||||||| ||| | || || |||| | Sbjct 836886 CAGTGGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAG 836827 Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138 | ||| | || | || | ||| || || || | | ||||| || Sbjct 836826 TACCACAGCTTCTGAGCACGAATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCG 836767 Query 81139 TAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 || | || |||| | |||| | || |||| ||| | ||||| ||||| ||||| Sbjct 836766 TACAGAGCCTCAAACTCCTCGCCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTGGGGCA 836708 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| || |||||| || ||||| ||| ||||||||| || |||||||| || Sbjct 836707 CATGAGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAG 836648 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 || ||||| ||||||| ||| ||||||| | || ||||| ||| | || || Sbjct 836647 AGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAG 836588 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTT 81371 ||||| | || ||| || ||||| ||||| || || | ||||| | || | ||| Sbjct 836587 GAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTT 836528 Query 81372 GCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 | ||||||||||| |||||| |||||||| ||| || || |||| ||| ||||| Sbjct 836527 G---TTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGAT 836471 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTG 81489 || || | || ||||| || || |||| || || |||| || | | || Sbjct 836470 AATGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTG 836411 Query 81490 CTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549 || || |||||| ||||| | | ||| || ||| |||||| |||| || Sbjct 836410 GACGTTCAA--ACCGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTG 836353 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 ||||| || ||||| ||||| || | |||||||| | |||||| || |||| || Sbjct 836352 TCATAGATACCCTCAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCT-- 836295 Query 81610 GGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 |||||| | | || |||||||| || || |||| ||||| |||| | | | | Sbjct 836294 GGGCTTGCGGGGTACCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGG 836235 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| |||| || || || ||| || ||| ||||| || || || | || | Sbjct 836234 ACATGAGGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCA 836175 Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756 | ||||| | ||||| ||| ||| |||| Sbjct 836174 CTCGCATGATCATGTGCTGTGGCCGCTCG 836146 >seq140 Length=1272624 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| ||||| || || || || ||| | Sbjct 762786 ATGCAGATCTTTGTCAAGACACTGACGGGTAAGACGATTACCCTGGAAGTGGAATCATCT 762727 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 762726 GATACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 762667 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||||||||||||||| || || || | ||||||||| ||| ||||| || Sbjct 762666 CAGCGCTTGATTTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGC-GACTACAA 762608 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||| || || || | ||||| || ||||| || Sbjct 762607 CATCCAGAAGGAGAGCACTCTGCACCTGGTTCTCCGTCTCCGTGGTGGCCA 762557 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 763531 ATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 763472 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| ||||| | || || |||||||||||||| ||||| || ||| Sbjct 763471 TCCGACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAC 763412 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| Sbjct 763411 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTAC 763352 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || ||||| || || | || ||||| ||||| Sbjct 763351 AACATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTTCGTGGTGG 763302 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || ||||| ||||||||||| ||| | ||| | Sbjct 763230 GTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 763171 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 763170 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATC 763111 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||| | || ||||| | ||||| || | || ||||| Sbjct 763110 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 763051 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | |||||||||||||| Sbjct 763050 TCTACACTCCACCTTGTCCTCCGTCTTCGCGGTGG 763016 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || ||||| |||||| | Sbjct 763014 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 762955 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||||||||||||||| ||||||||||||||| Sbjct 762954 GATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGACCAG 762895 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||||||||| || || || | || || || ||| ||||| || Sbjct 762894 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGC-GACTACAA 762836 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| || || | ||| | ||||| || ||||| Sbjct 762835 CATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 762788 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 73071 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 73012 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 73011 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 72952 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| |||||||||| || ||||| ||| ||||| || Sbjct 72951 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 72893 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||| |||| || || ||||| Sbjct 72892 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 72845 >seq162 Length=142150 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 93638 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 93697 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 93698 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 93757 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||||||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 93758 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 93817 Query 27594 GG 27595 || Sbjct 93818 GG 93819 >seq137 Length=1488176 Score = 89.7 bits (98), Expect = 6e-13 Identities = 226/336 (67%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCA-CAAGTCGCACGAGTGCACGCTTATTAT 31268 ||||| | ||| |||||| ||| || |||| | | | ||||||||||| || || | Sbjct 662741 AAGCTGGTCGAGGCCAACCTGGCAGGCACCCGGCGCGGC-CACGAGTGCACCCTCATCCT 662683 Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328 ||||| |||||||| || || | || || | |||| ||| | || | | Sbjct 662682 GACCGAAGGTGACTCCGCCAAAGGTCTGGCCGTGTCTGGAC-GAGCCATCCTGGACCCTG 662624 Query 31329 TGCGT-TCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTA 31387 || |||| || ||||| ||||| || |||| || ||||| || ||||| ||| || Sbjct 662623 ACCGAATCGGTGTCTTTCCACTCCGTGGTAAGCTGCTCAACGTGCGAGACGCATCCATTG 662564 Query 31388 AACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG 31447 | ||| | || | ||| ||||| || ||| | || || |||| || || |||| Sbjct 662563 ACCAGATCACCAAAAATCAAGAGATTCAGAACATCAAGCAGTTCCTGGGTCTCAAGCACA 662504 Query 31448 GCAAGGTATATAATT-CACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGAC 31506 |||| || | ||| |||| || || ||||| | ||| ||||| ||| |||| Sbjct 662503 AGCAGGTGTACACGGACACGAAGAGCCTT-CGCTACGGCCACCTGATGATCATGGCCGAT 662445 Query 31507 GCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTC 31542 |||| ||||| ||||| |||||||||||| || Sbjct 662444 CAGGATCATGACGGTAGTCATATCAAGGGTCTTCTC 662409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309209477040