Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq140 120 2e-22 >seq140 Length=1272624 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | ||||| | ||||||||| |||| ||| | || | || || | ||| Sbjct 1078411 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 1078352 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 1078351 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 1078293 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 1078292 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 1078233 Query 30018 CCCCCGACCTCTGGTAGAGCTGACA 30042 | | |||| |||||||||||| || Sbjct 1078232 CGCAGGACCGCTGGTAGAGCTGGCA 1078208 Score = 109 bits (120), Expect = 4e-19 Identities = 255/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 |||||| || || || ||||| | ||||| |||||||| |||| | || || Sbjct 1078111 GTGGCAGGGCGGGAGGGCCATCTTGTTGAAGTCGCGCGGGTTCCACGCGCTGAGTATCAT 1078052 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30201 |||||||| | |||||| | | | || ||| | |||||| || || || Sbjct 1078051 CCGCCTGTCATACGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACGCC 1077992 Query 30202 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30261 | | || | |||||| | | ||| |||||| || || || |||| ||||||||| Sbjct 1077991 CTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGAA 1077932 Query 30262 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 30321 ||||| || || |||||||| || | || | |||| | | ||| |||| | || Sbjct 1077931 GCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCCGACGCTGTCGAGGAA 1077872 Query 30322 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCAGAGAGCTCTTTG--G 30377 || | ||| |||||| ||||||||||||| || || | || | ||| || ||| | | Sbjct 1077871 CTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGACG 1077813 Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437 || | || ||||| || |||||| || ||||| | |||||||| ||||| | Sbjct 1077812 AGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACGC 1077756 Query 30438 TCTTGGTCGTGAGGAGGGG 30456 ||| || ||||||||||| Sbjct 1077755 GCTTCGTGGTGAGGAGGGG 1077737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309573031364