Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq140 120 3e-22 >seq140 Length=1272624 Score = 120 bits (132), Expect = 3e-22 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| || || || | ||||||||| | || | || ||||||||||| || Sbjct 1078207 CTGCCAGCTCTACCAGCGGTCCTGCGACATGGGGCTCGGCATCCCCTTCAACATTGCGAG 1078266 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||||||| ||||| |||| || || ||| | | |||| || ||||||| Sbjct 1078267 CTACGCGCTGCTCACGCACATGCTCGCCCACGT-GTGCGATCTGGTGCC-GGGGAGC-CT 1078323 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 | |||| |||| || ||||| ||||| | ||||||||||| || | || || Sbjct 1078324 CACCCACGTCATGGGAGACGCGCACGTCTACATCGACCACATCGAGGCCCTGCAGACACA 1078383 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 ||| | || ||||| || ||||||||| |||| Sbjct 1078384 GCTCGAGCGCGAGCCGCGGCCGTTCCCCGAGCT 1078416 Score = 120 bits (132), Expect = 3e-22 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||||||| || ||||| || | ||||| || | || ||||||||||| Sbjct 1078416 AGCTCGGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCG 1078357 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACG 6616 | ||||| ||||| || |||| |||| | ||||||| || |||| | | ||| Sbjct 1078356 ATGTAGACGTGCGCGTCTCCCATGACGTGGGTGAG-GCTCCCC-GGCACCAGATCGCAC- 1078300 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || |||| ||||| ||||||||| ||||| || ||||||||||| || | || | | Sbjct 1078299 ACGTGGGCGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGC 1078240 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || |||||||||||| Sbjct 1078239 CCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 1078207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380 || || ||||||||||||| |||| || || || || || |||| ||| || | | Sbjct 1077836 GGCGTCAAGATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGACA-GCGTCGGCCTGGC 1077894 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 || || | |||||| ||||||| |||||||| ||||||||| | |||||||| || Sbjct 1077895 GCACCGCGACGTCGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGC 1077954 Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | || || | ||||| | || |||| | ||||||||| || Sbjct 1077955 CGAGTA-CGTCGACGCCAACACCGACTACGCCGGCAAGGGCGTCGACCAGCTGGC---CG 1078010 Query 34500 TGATCGACACCTTGAAGCGGA---ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 ||||| | | | ||| | |||| ||||||| |||| | | ||||||||| Sbjct 1078011 AGATCGTCCACAAGCTGCGCACCAACCCGTATGACAGGCGGATGATACTCAGCGCGTGGA 1078070 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 ||||| || || |||||| ||||| || ||||||| || ||| ||||||| Sbjct 1078071 ACCCGCGCGACTTCAACAAGATGGCCCTCCCGCCCTGCCACATGTTCGCCCAGTTCTACG 1078130 Query 34617 TCGCG 34621 || || Sbjct 1078131 TCTCG 1078135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| || ||||||| || ||||| |||||| || || Sbjct 1078135 CGAGACGTAGAACTGGGCGAACATGTGGCAGGGCGGGAGGGCCATCTTGTTGAAGTCGCG 1078076 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGT---TCCGCTTCAAGGTGTC 6840 |||||||||||||| | | |||| ||||||| |||| | ||| | | | | Sbjct 1078075 CGGGTTCCACGCGCTGAGTATCATCCGCCTGTCATACGGGTTGGTGCGCAGCTTGTGGAC 1078016 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGAT 6899 |||| || ||||||||| | |||| || | ||||| | || || | || | Sbjct 1078015 GATCTCG---GCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACG-T 1077960 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||| || |||||||| | ||||||||| |||||||| ||||||| |||||| | || | Sbjct 1077959 ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGC 1077900 Query 6960 GAGATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | || ||| |||| || || || || || |||| ||||||||||||| Sbjct 1077899 GGTGCGCCAGGCCGACGC-TGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 1077841 Query 7019 ACCCC 7023 || || Sbjct 1077840 ACGCC 1077836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261464252240