Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq140 120 2e-22 >seq140 Length=1272624 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 ||| || || | ||||| | ||||||||| || ||| | || | |||||| | ||| Sbjct 1078411 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 1078352 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 |||||| || ||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 1078351 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 1078293 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 1078292 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 1078233 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA 29814 | | |||| ||||||||||||||| Sbjct 1078232 CGCAGGACCGCTGGTAGAGCTGGCA 1078208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||| ||||||||| ||||| || || |||||||| || | || | |||| | | | Sbjct 1077948 AAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGG 1077889 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCT 30134 || |||| | || || | ||| |||||| ||||||||||||| || || | || Sbjct 1077888 CCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCG 1077829 Query 30135 CGGAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30192 | ||| || ||| | ||| | || ||||| || |||||| || ||||| | ||||| Sbjct 1077828 CTGAGGGC-CTTGGACGAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGAC 1077773 Query 30193 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||| ||||| | ||| || ||||||||||| Sbjct 1077772 GGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 1077737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162373330962