Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq86 150 2e-31 >seq86 Length=1711676 Score = 150 bits (166), Expect = 2e-31 Identities = 549/849 (65%), Gaps = 23/849 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| |||| || ||||| |||||||| || || ||||| | | ||||| || Sbjct 1358660 TTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTC 1358601 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||| ||||| || || | | ||||| || ||| || || || ||| Sbjct 1358600 TCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCATTGCCGAGGGCAACCAGC 1358541 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | ||||| || ||||| || || ||||| ||||||| | | |||| || || | | Sbjct 1358540 AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGG 1358481 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || ||| || || | ||||||||||| || || || ||||| || ||||| || Sbjct 1358480 GCGCA-AGGCAGAGCCTCGGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGAT 1358422 Query 4496 ATCTTTTATTTTATCTTTAGATG----GTTTATTTA-CTAAGTATCCAAACAATAAACAC 4550 || || || || | || | || || | | || | || | || Sbjct 1358421 GTCACGAATCACCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGT----GCAGCAGGCAG 1358367 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| || |||| ||| ||||| | || || ||||| ||||| || | ||| Sbjct 1358366 GCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 1358307 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||| ||| || ||||| || || | |||||| | || ||||| ||| Sbjct 1358306 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATG 1358247 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATC---GGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || || || |||||||| || || | | ||| | ||||| | ||||| | Sbjct 1358246 CCCTCGACAGCGGCAAAGGCAACGAGGCGCTGGGCAAAGGACGAGTT---CTTGTCCTGG 1358190 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 |||||| | ||||||| || || || || ||| ||||| || | || ||||| Sbjct 1358189 ATCCATCGAATCGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 1358130 Query 4788 AATAATTTACTTTTTTCAAATG-GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | || || || | || | || |||||||| || || ||| ||| | Sbjct 1358129 AA-GAGGTAGTTGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGT 1358071 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || ||||| || ||||| ||||| | ||| || | | Sbjct 1358070 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAAT 1358011 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || ||| | || | || || | ||| ||||| || || ||||| ||| || Sbjct 1358010 CTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGC 1357951 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCA 5023 || || |||| | ||||| || ||||||| |||||| || | | || ||||| Sbjct 1357950 GAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 1357891 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | ||| || || | | |||| ||||| | ||||| || || || || || || Sbjct 1357890 GTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 1357831 Query 5084 TTTGTACAT 5092 ||||||||| Sbjct 1357830 TTTGTACAT 1357822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048730820611