Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq140 123 2e-23 seq135 91.5 1e-13 >seq140 Length=1272624 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | ||| Sbjct 1078411 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 1078352 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 1078351 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 1078293 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 1078292 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 1078233 Query 27284 CCCCCGACCTCTGGTAGAGCTGACA 27308 | | |||| |||||||||||| || Sbjct 1078232 CGCAGGACCGCTGGTAGAGCTGGCA 1078208 Score = 100 bits (110), Expect = 2e-16 Identities = 253/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || ||||| | ||||| |||||||| |||| | || || Sbjct 1078111 GTGGCAGGGCGGGAGGGCCATCTTGTTGAAGTCGCGCGGGTTCCACGCGCTGAGTATCAT 1078052 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 |||||||| | |||||| | | | || ||| | |||||| || || || Sbjct 1078051 CCGCCTGTCATACGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACGCC 1077992 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 | | || | |||||| | ||| |||||| || || || |||| ||| ||||| Sbjct 1077991 CTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGAA 1077932 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 27587 ||||| || || |||||||| || | || | |||| | | ||| |||| | || Sbjct 1077931 GCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCCGACGCTGTCGAGGAA 1077872 Query 27588 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTG--G 27643 || | ||| |||||| ||||||||||||| || || | || | ||| || ||| | | Sbjct 1077871 CTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGACG 1077813 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 || | || ||||| || |||||| || ||||| | |||||||| ||||| | Sbjct 1077812 AGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACGC 1077756 Query 27704 TCTTGGTCGTGAGGAGGGG 27722 ||| || ||||||||||| Sbjct 1077755 GCTTCGTGGTGAGGAGGGG 1077737 >seq135 Length=1177387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/145 (76%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| |||||||||||||| || | |||||| |||||||| || ||| | | || Sbjct 452765 AGATTGGTGACAAGTTTGCTTCTCGTCACGGA-CAAAAGGGCACTATTGGTGTCA--CTT 452821 Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 48661 ||| |||||||||||||| ||| || || || | ||||||| |||||||||||| Sbjct 452822 ACCGGCAGGAGGACATGCCGTTCACCAGAGAGGGAATCACGCCCGACATCATCATCAACC 452881 Query 48662 CCCACGCCTTTCCCTCCAGGATGAC 48686 |||||||| |||| || | ||||| Sbjct 452882 CCCACGCCATTCCGTCTCGTATGAC 452906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506447937377