Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq140 192 1e-43 seq162 138 2e-27 seq86 89.7 1e-12 >seq140 Length=1272624 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||||| || || |||||||||||||| Sbjct 72844 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 72903 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||||||||||| || || ||||| || Sbjct 72904 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 72963 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 72964 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 73023 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 73024 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 73074 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||||||||| | Sbjct 763301 ACCACCACGAAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 763360 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||| | ||| || |||||| || Sbjct 763361 GAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 763420 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| || | ||||| Sbjct 763421 AATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGAC 763480 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 763481 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 763528 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | ||||| || || |||||||||||||| Sbjct 762560 CCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 762619 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || || || || || ||||| ||||| || || |||||| ||| Sbjct 762620 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAAATCAAGCGCTGCTGGTCAGGCGGG 762679 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| | || ||| | || || || || || | ||| ||| Sbjct 762680 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTATCAGATGATTCCACT 762739 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||||||||||| ||||| || || |||||||| Sbjct 762740 TCCAGGGTAATCGTCTTACCCGTCAGTGTCTTGACAAAGATCTGCAT 762786 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||||| || || || ||||||||||| Sbjct 762787 ACCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 762846 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || || || || || || || |||| || || ||||| || Sbjct 762847 CAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGG 762906 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | |||||||| || || | ||||| Sbjct 762907 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCGAC 762966 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 762967 CTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 Score = 136 bits (150), Expect = 8e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || || ||||||||||| | Sbjct 763015 ACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGA 763074 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 763075 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 763134 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| || | || || Sbjct 763135 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 763194 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||||||||||||| || |||| ||||| |||| Sbjct 763195 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 763232 >seq162 Length=142150 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || |||||| Sbjct 93817 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 93758 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 93757 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 93698 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 93697 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 93639 >seq86 Length=1711676 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTG--CGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCAT 230248 ||||||| |||| ||| ||| | |||||| || | |||||||| | | ||||| Sbjct 1358450 AGGAGTT--TTTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCAT 1358507 Query 230249 GGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGT 230308 | ||| || || || || || || || || | | || || || || | ||||| || Sbjct 1358508 GAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCGGCAATGAGAAGGT 1358567 Query 230309 GTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAA 230368 ||| || || |||||||| | ||||||||| |||||| || || || || || Sbjct 1358568 GTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAA 1358627 Query 230369 CTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||||| ||||| ||| ||| || || | | ||||||| Sbjct 1358628 CTTCTTCGAGAAGCGCGTCGCCGACTACCAGAAGGCCGGTGT 1358669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736960305218