Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq97 138 2e-27 >seq97 Length=261666 Score = 138 bits (152), Expect = 2e-27 Identities = 279/406 (69%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| |||| | ||||| ||||| | || |||||| ||| Sbjct 3665 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCA 3724 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 || ||| ||||||||||| || || | | || | | || || | || | ||| || Sbjct 3725 TCTCTCGTGACGAGGGTCTGCA-CACCGACTTTGCCTGCCTGTTGCACTCCCACCTCAAG 3783 Query 230356 AACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 ||| || | || ||| | || | ||||| || || || || || || | Sbjct 3784 AACCGCGCCAGCAAG-GAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCA 3842 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT-ATGG 230473 |||||| | || ||| | || || ||| | ||||||||| | ||||| ||| Sbjct 3843 AGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCC-AACTTGATGA 3901 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 ||||||||||| || || || |||||| | ||||||| || || ||||||| | | Sbjct 3902 AGCAGTACATCGAGTTTGTTGCTGACCGCCTGCTTGTTGCTCTCGGCAACGAGAAGATCT 3961 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| ||| |||||||||| ||||||||| |||||| ||| || |||||||||| Sbjct 3962 ACAAGTCTTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAACT 4021 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||| || |||||||| ||||| |||| | | ||||| ||||| Sbjct 4022 TCTTTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTCATGAA 4067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822549789410