Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq97 123 3e-23 >seq97 Length=261666 Score = 123 bits (136), Expect = 3e-23 Identities = 378/579 (65%), Gaps = 19/579 (3%) Strand=Plus/Minus Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 || ||| || || || ||| || | |||||||| | ||| || ||||| ||||| Sbjct 3768 CAACAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 3709 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 |||| |||||||| ||||| ||||| | ||| || || | || || | || Sbjct 3708 GGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCT 3649 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 ||||| ||||||||||||| ||||| || | | || | || | | | || || Sbjct 3648 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTT 3589 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTCTA 17195 || | ||||| || |||| || || || |||| |||||| || || || | Sbjct 3588 GTCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTGCGA-ATGCAAGGGATAGTCTCAA 3530 Query 17196 TGGCCTTAAA----TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 |||| || || || || | || |||| || | || || || |||||||| Sbjct 3529 TGGCGTTGAAGAGATAGTTGCGCTGG---CTGTTC-TCCTTGATGTAGGTGTCGATGAGC 3474 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 ||| ||| | |||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 3473 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGA 3414 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | || || || || || ||| || || | || || ||||| || ||||| Sbjct 3413 GCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCA 3354 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || ||||| || || |||| || || ||||| || || ||||| | || Sbjct 3353 TCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG- 3295 Query 17432 ACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 ||| |||||| | | ||| ||||| | || | ||||||| |||||| || Sbjct 3294 --GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAG 3237 Query 17486 CTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524 |||| | ||||| || ||||| | ||| || | |||| Sbjct 3236 GAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTAATTG 3198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544907782760