Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq58 168 8e-37 >seq58 Length=533810 Score = 168 bits (186), Expect = 8e-37 Identities = 278/399 (70%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 |||||||||||| | | || || || |||||||||||| | |||| |||| Sbjct 276700 ACGTAGAACTGGGCAAACATATGACAAGGTGGCAGGGCCATGCTCTTGAAGTCCCGCGGG 276641 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGG 145989 ||||| ||| |||||| | |||| | | ||||| | | || || | Sbjct 276640 TTCCAAGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATC 276581 Query 145990 TCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCC 146049 || ||||||||| || |||| || ||| |||||||| | || |||||| |||| Sbjct 276580 TCGGCGAGCTGGTCGACACCCTTGCCGGCGTAGTCTGTCTTTGCATCTACGTACTCGGCG 276521 Query 146050 CCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCC 146109 || ||||||| ||||||||| ||||||||||| |||||||| || ||| | ||| | Sbjct 276520 CCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCAACCTCGCGGTGGGTC 276461 Query 146110 AGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CC 146167 || ||| | | | ||||||| || |||||||||||| ||||||||||||||||||| | Sbjct 276460 AGGCCGACGCTGTCGAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACT 276401 Query 146168 TCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGA 146227 || ||| | | || |||| ||| |||||||||||| ||||| ||| || Sbjct 276400 TCATTGAGGG--CGAGGGCCGACGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGA 276343 Query 146228 CCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | | | |||||||| ||| || || ||||| |||| Sbjct 276342 CGGCACGGAGGAAGACCCGCTTTGTTGTTAGCAGAGGGA 276304 Score = 107 bits (118), Expect = 2e-18 Identities = 216/316 (68%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 145531 CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCA 145590 ||| ||||||| | ||| | ||||||||| | |||||||| ||| |||| | | | Sbjct 277099 CCCGATTAGACGGACATGTTCATGGGGATTGATTTGTGGGGGTCGTATCCCTTGACCACG 277040 Query 145591 AAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT 145646 |||||||| ||| | || |||| ||| | || ||| || | ||| ||| Sbjct 277039 AAGTCCTCGGCCTTCCAGCCATCGATG-CTGCCGCCCTTTTCCCGCGTAATCTCCAGCTC 276981 Query 145647 GGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 ||| || ||||| || ||| | || ||||| || || | || | ||| | | || Sbjct 276980 GGGGAATGGCCGAGG-CTCGCGCTCCAGCTGTGTCTGGAGAGCATCAATGTGATCAATGT 276922 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||| ||||| |||| ||||||| | | | || ||| | || | || ||| | Sbjct 276921 AGACGTGTGCGTCTCCCATGACGTGGGTTAGGCTTCCTGGCACTAGATCACAGACGTGAG 276862 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 ||| ||||| || ||||| | |||||||| ||||||||||| | || || ||||||| Sbjct 276861 CGAGCATGTGCGTGAGCAGCGCATAGCTGGCAATGTTGAAGGGGATGCCGAGGCCCATGT 276802 Query 145826 CCCCCGAGCGCTGGTA 145841 | | || ||||| || Sbjct 276801 CGCAAGACCGCTGATA 276786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076010772280