Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq97 327 1e-84 seq1 145 8e-30 seq47 120 3e-22 >seq97 Length=261666 Score = 327 bits (362), Expect = 1e-84 Identities = 551/793 (69%), Gaps = 17/793 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||| ||| | |||||| Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 3265 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 3324 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || |||||| || ||||| ||||||||||| ||||||||||| Sbjct 3325 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 3384 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 3385 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 3444 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || || ||||||||||| ||| | |||| Sbjct 3445 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT------CAAGGAG 3498 Query 116933 GAGA---AGC---TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | | ||| | | | || |||||||| ||||| || || ||| | ||||| Sbjct 3499 AACAGCCAGCGCAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAG 3558 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || || ||||| | |||||| | || | | |||| | |||||||||| Sbjct 3559 GCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGTT 3618 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || ||||||||||| ||||||| ||| || || |||| || |||||| Sbjct 3619 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTC 3678 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || ||||||||||||||||| || ||||||||||||||| | |||||| Sbjct 3679 AAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 3738 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 |||||||| |||||||||||| || || | || | | | || | ||| | Sbjct 3739 GGTCTGCACACCGACTTTGCCTGCCTGTTGCACTCCCACCTCAAGAACCGCGCCAGCAAG 3798 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || | || ||| ||||||| || ||| || ||||| ||| | ||||| Sbjct 3799 GAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAG 3858 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || |||| |||||||| | || | | | |||| ||| ||||||||||| Sbjct 3859 GCTCT-CCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTT 3917 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 || || ||| | ||||| | | || | | || ||| |||||| | ||||||| Sbjct 3918 TGTTGCTGACCGCCTGCTTGTTGCTCTCGGCAACGAGAAGATCTACAAGTCTTCCAACCC 3977 Query 117406 GCTGGACTTTATG 117418 | ||||||||| Sbjct 3978 CTTTGACTTTATG 3990 >seq1 Length=17084797 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1761055 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1761114 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||| ||| ||||| Sbjct 1761115 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1761174 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | |||| ||| || || |||||||| || | |||||||| | ||||||| Sbjct 1761175 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTAC 1761234 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || || || ||||| || | || || Sbjct 1761235 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1761284 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || |||||| |||| || || | | Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||| || | ||||| Sbjct 3412042 GATACCATCGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 3411984 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| |||||| | | ||||||||| Sbjct 3411983 GCAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 3411924 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 3411923 CATCCAGAAGGAGAGCACACTGCA 3411900 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| |||| || || | | Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| ||| |||| || || ||||| |||||| |||| ||| Sbjct 3412270 GATACCATCGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCGGATCAG 3412211 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || |||| ||||| | | |||||||||| Sbjct 3412210 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGCGACTACAAC 3412151 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||| || || || || Sbjct 3412150 ATTCAGAAGGAGAGCACACTTCACCTTGT 3412122 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| || || ||||||||| |||| || || | | || | | | Sbjct 3412548 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCG 3412489 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | | ||| || || | ||||| |||||||| || | |||||||| ||||||| Sbjct 3412488 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGACTCA 3412429 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || || | || |||||| |||||||||||| ||||||| Sbjct 3412428 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGG 3412369 Query 40880 AGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 3412368 AGTCTACTCTCCACCTTGT 3412350 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || |||||| | || || || | || Sbjct 3412844 ATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3412785 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| ||||| ||||| ||||| | |||||| Sbjct 3412784 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 3412725 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || || || |||| || || || |||||||||| Sbjct 3412724 CAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACTCTGTCCGACTACAAC 3412665 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 3412664 ATCCAGAAGGAGTCTACTCTCCA 3412642 >seq47 Length=144723 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 138574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 138515 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 138514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 138455 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | || ||||| ||||||||||||||||||| Sbjct 138454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 138395 Query 40879 G 40879 | Sbjct 138394 G 138394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218510894320