Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 >seq1 Length=17084797 Score = 100 bits (110), Expect = 4e-16 Identities = 654/1009 (65%), Gaps = 138/1009 (14%) Strand=Plus/Minus Query 228172 aataatttaacaaaatcgttaattaaattaaatattagta---attgtaatataataaat 228228 ||| || ||| ||||| || ||||| ||| || | || ||| ||| |||||| | Sbjct 4536373 AATTATATAAAAAAATGTTTTTATAAATAAAAAATAAATATATATTTTAAAATAATATA- 4536315 Query 228229 gctagttctttaaaaaatttaattaatttaaaagaattggatatatctaacaattataat 228288 | | | || |||||||| |||||| |||| || | ||||| ||| ||||||| Sbjct 4536314 ---AATATTATATAAAATTTA-TTAATTAAAAAAAAA--GTTATAT-TAAT--TTATAAT 4536264 Query 228289 ataaatatttCATCATTACCaaaaacattaattaaattaaatattagttca------tgt 228342 | |||| || || || | ||||| ||||| || |||||||| | | | Sbjct 4536263 AAAAAT--TTAATAATAAT-AAAAATATTAA--AATACAAATATTATAAAAAAAATATAT 4536209 Query 228343 aatataaaaaatactaattttataattaatttagataatttGAAAGAATTAGATAT-ATC 228401 |||||| ||||| ||| |||||||| |||| || ||| | | | |||| | Sbjct 4536208 TATATAATAAATA--AATATTATAATTTATTT-------TTTAAAAATTAAAATATTAAA 4536158 Query 228402 TAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTAG 228461 | ||||||||||||| | |||| | |||| ||||| ||||| ||||||| Sbjct 4536157 AAAAAATTTTAATATATAAATTTAAATATTA--------ATTAAAAAAATTTAATATTA- 4536107 Query 228462 GACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATT-TGAAAGAATTAG 228520 ||| || |||| ||| ||| |||||| | |||||| | ||| || | Sbjct 4536106 --------ATAATAATAATATTAA--TTAAAATTAA-AAAAATAATTATAAAATAAAAAT 4536058 Query 228521 ATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTGATTACATTAA 228580 | |||| || ||||| || || | ||| | |||| || || ||| |||| | ||| Sbjct 4536057 A-ATAT-TAAAAATTAACTTAAAATTTTTTTAATATTA-AAATATTATT-ATTATAATAA 4536002 Query 228581 ATATTAATTCATGTTATATAAAACACACTAATTTTATAAATGATTTATATAATTTGAAGG 228640 ||||| | |||| ||| ||| | ||||||||||||||| Sbjct 4536001 ATATT------TTTTATTTAA-------------TAT-ATTGATTTATATAATTTTTTAA 4535962 Query 228641 AATTGGATATATCTAGAAATTATAATATA-AATATTTCATCATTACCAAAATCA--TTAA 228697 | || | | | | | || ||||| |||| |||||| || |||| || | |||| Sbjct 4535961 ATTTTGTTTTTTTTTAAATTTATACTATATAATATTAAATAATTATATTTATAATTTTAA 4535902 Query 228698 TCAAATTAAATATTAGTGATTGCGATATTA-AAAATACTAATTTTATAAATGATTTAGAT 228756 | | ||| ||| ||| | || || ||| |||| | ||| ||||||||| | | | Sbjct 4535901 TTATATTTAATTTTA-TAATAAATATTTTATAAAAAAATAAATTTATAAAT--TAAAAAA 4535845 Query 228757 AATTTGAAAGAATTAGATATATCTAACAATTATAATATAAATATTTCATCATTACCAAAA 228816 || || ||| ||||| | || | || || | |||||||| || || || |||| Sbjct 4535844 AAATTTAAATAATTAAAAATTT----TAAATAAATTATAAATA-TTAATAAT--ATAAAA 4535792 Query 228817 ACATTGACTACATTAAATATTAGTTCATGTAATATAAAAAATACtaattttataattaat 228876 || || || |||| ||| | | | ||||||| |||||| || |||||||||| Sbjct 4535791 ACTTT---TATTTTAATTATAAAATTA-ATAATATATAAAATATTA--TTTATAATTATA 4535738 Query 228877 ttagat---aattt--gaaagaattagatatatctaaaaat--tttaatataaatatttC 228929 ||| | ||||| ||| || || ||| || | ||||| ||| | || ||| || Sbjct 4535737 TTAATTTTAAATTTAAGAATTAAATAAATAAATATTAAAATTATTTTTTTTACATAATTA 4535678 Query 228930 ATCATTACCAAAATCATTGAT-TACATTAAAT-ATTAA--TTCAT-GTTATA-TAAACCA 228983 | |||| ||||| ||| || || | ||| | ||||| || || | ||| |||| | Sbjct 4535677 A--ATTAAAAAAAT-ATTTATATAAAATAATTAATTAACTTTAATAATAATATTAAAAAA 4535621 Query 228984 TA-CTAATTTTATAAATGATTTATATAATTTGAAAGAATTAGATATATCTAACAATTATA 229042 || ||| |||| ||| | ||| |||||||| ||| || |||| ||| |||| || Sbjct 4535620 TATATAAATTTAAAAAAGTTTTTTATAATTTTAAA----TAAATAT---TAAAAATT-TA 4535569 Query 229043 ATAT-AAATATTTCATCATTACCAAATACATTAATTGAA--TTAAATATTAGTT------ 229093 |||| |||||||| | ||| ||| | ||||| || |||||||||| || Sbjct 4535568 ATATAAAATATTTATTAATTTTTTAAT--AATAATTAAAGTTTAAATATTATTTTAAATA 4535511 Query 229094 ---CGTGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATTT 229139 | || ||| ||||||| || || ||||||| || | ||||||| Sbjct 4535510 ATAGTTTTTTTATTAAAAATAATATTTCTATAATTTATATTAATAATTT 4535462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454989577600