Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq93 107 4e-18 >seq93 Length=305044 Score = 107 bits (118), Expect = 4e-18 Identities = 342/526 (65%), Gaps = 11/526 (2%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || ||||| || || ||||| || ||||||||||||| || || ||| Sbjct 225683 TTCAAGACTTTGGAGCGGTCATACCTCCTGAAGCTTGATGGCAAGATTGTTGAGCGACCA 225624 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | |||||||||||||| || || || ||||| ||| | || || Sbjct 225623 CAGCACATGATTATGCGAGTGGCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTG 225564 Query 248953 GAGACGTA-CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| || |||| | | | | | | | || || ||| | || || |||||||| Sbjct 225563 GAGACATACCACCTCATGTCGAGCAAG-TTCTTCACCCACGCCTCCCCCACCCTCTTCAA 225505 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 ||| |||||| | |||||| || ||||| | ||| |||| | ||||| Sbjct 225504 CGCTGGTACCCCGCAGGCCCAGCTGTCTTCATGCTTCTTGGTTGACATGAAGGACGATAG 225445 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGG 249128 | || || || |||||||| || | ||||| || | |||||| || | || || Sbjct 225444 CATTGAGGGTATCTATGACACTCTGA---AGACGTGTGCCATGATTTCCAAGATGGCTGG 225388 Query 249129 CGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAA 249188 ||| ||||| | |||| | |||||| || | ||||| ||||| || || || Sbjct 225387 CGGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGTTCTTACATTGCGGGCACCAA 225328 Query 249189 TGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCAT 249248 || | |||||| | ||| | |||||| ||| | ||| ||||| | | | Sbjct 225327 CGGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGT 225268 Query 249249 CAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 | |||||| || | || || | || ||||| || |||| |||||||| Sbjct 225267 CGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTGGAGCCATGGCACGC 225208 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 ||| | || |||||||| || | |||||| |||| || ||| Sbjct 225207 TGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAG 225162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764927933376