Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq93 345 4e-90 seq97 230 2e-55 seq1 105 6e-18 >seq93 Length=305044 Score = 345 bits (382), Expect = 4e-90 Identities = 1205/1864 (65%), Gaps = 47/1864 (3%) Strand=Plus/Plus Query 22132 TGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTA 22191 ||||||| | ||| |||||||| |||||||| ||||| ||||| | |||||| | Sbjct 223890 TGCGGCCTG---GGTACGAAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGT 223946 Query 22192 AAAATGTATCGACGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGAC 22249 || || || || ||| || |||| | || | ||||| | || | ||| Sbjct 223947 GAAGTGCATGCTGGT-AATCTTGCCCATTG-TGGGGTCCTTCATGTGGATGTTCAGGGAC 224004 Query 22250 TGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCATCGA 22308 || ||| || || || || || || ||||| ||||| | | |||| | ||| || Sbjct 224005 TGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCATCTGGA-CAATTTGGCGCTGAGA 224063 Query 22309 CATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTG 22368 || ||||| ||||||||||||| | | |||| || || || ||| |||| Sbjct 224064 AATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCTCGGGGATGTTGGGGATGTTCTG 224123 Query 22369 GACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGC 22428 | ||| ||||| | || || || || || | |||| ||| | || || | Sbjct 224124 AATGGAGCCGTTCTCAGCAATAATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTC 224183 Query 22429 GGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCG 22488 | || || |||| || | |||| || || || |||||||||| | ||| ||||| Sbjct 224184 GACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGGCG 224243 Query 22489 TTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGT 22548 ||||| |||||||| ||| | || ||||| | |||||||| ||||| ||||| | || Sbjct 224244 CTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGT 224303 Query 22549 CGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATT 22606 || || ||||| || || | || | ||| | || ||||||| |||| | Sbjct 224304 GCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTG 224363 Query 22607 TTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 | || ||| || ||| ||||||| ||||| ||| | |||| ||||||| ||| Sbjct 224364 CTCCTTGAGAGAGTC--CCACTCCCACAAGTCGGAGGGCTTGACAT---CCCACATGTCG 224418 Query 22667 TATTGCAACACGCCGCGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725 |||| | | ||| | || || | | |||| | | | || ||| || || | | Sbjct 224419 AATTGAAGGATGCCCTCAGATGCAGGTGATCCCTT-GAATGATTGGTAGGGGCCCTCGAC 224477 Query 22726 CGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785 | ||||| || ||||| | || ||| || || ||||| ||||| | ||| Sbjct 224478 CTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTT 224537 Query 22786 GTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841 ||||| ||| || || ||| || | ||||| |||| | ||| || | Sbjct 224538 GTTCAGCTCGCGAGCCTCAGGAGAC----TCAAAAGGCATGCGCAGGGCAAGGAAAGCAT 224593 Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT---- 22897 | || | |||||| || || | |||||| |||| || || || || || Sbjct 224594 CAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGACGCATGTTG----CTGTTACGG 224649 Query 22898 GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT 22957 ||||| | | ||| || ||| ||| || | |||||| ||| | | || | Sbjct 224650 GCCTCCTGGACAGGGTAGTGGTTCACATCAATAATCTTGTTCAGGTTACGGACAACCACC 224709 Query 22958 TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA-ACGCCCGATTGTA--CAACAAACTTG 23014 || || | | |||||| || || | ||||| | ||| | Sbjct 224710 TTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACCCTTCGTTGTAGTCGACATAGGCA 224769 Query 23015 TTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACA 23074 || ||| | ||||| | ||||| || || ||||| || || |||||| | | Sbjct 224770 GGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATA 224829 Query 23075 ATTTCGGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTT 23131 || || || || || || ||| | || || |||| || |||||||||| || Sbjct 224830 ATCTCAGTGCAGAGGTTAGAGCTGCGG---ATGGTACCCAGGTTCTTCTGGTTGCTCTTG 224886 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 || ||||| ||||||||||||||| | || |||| |||||| ||| | || | | Sbjct 224887 CGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGG 224946 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTCGT 23249 || | ||||| |||||||| | | | ||| || || | ||| |||| |||| Sbjct 224947 ATGGAATACCACAGCTTCTGAGCGCGGATA-GTCTTGCGACCACGTCCCTCCTTC-TCGT 225004 Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309 |||| | ||||| || || || || | || || ||||| || ||||| || | | Sbjct 225005 ACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCACTCGT 225064 Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 | || |||||||| |||| ||| || ||||| || |||| || ||||| || | Sbjct 225065 TGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAA 225124 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| ||||| ||| | ||||| || || |||||||| || ||| |||||| | Sbjct 225125 TCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTTCTTGCGGA 225184 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 ||| | || || || || || || ||||| ||||| ||||| | |||||| || || | Sbjct 225185 GATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAG 225244 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| ||||| |||||||| | ||| ||||||||| | |||| ||||| | Sbjct 225245 GACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGG 225304 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | | || ||||||||| | ||| |||||| | ||||| | || || | | Sbjct 225305 GAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGC 225364 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 ||| |||| || || ||||| || || || || ||||| || || ||||||| Sbjct 225365 GGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAG 225424 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 |||| ||||| ||||| ||||| || || || | | |||||||| || ||||||| | Sbjct 225425 TGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCT 225484 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 | || | || ||| | || ||| || || ||| |||||| || ||| | ||| Sbjct 225485 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCG 225544 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || | ||| || || | | | |||||||| ||||| || || | || | Sbjct 225545 ACATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGCCA 225604 Query 23850 CGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 | ||||| ||||||| || |||| ||| || | ||| | || || | || |||| Sbjct 225605 CTCGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGGAGGTATG 225664 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | || | || || || || || || || | ||||| ||||| ||||| | ||| |||| Sbjct 225665 ACCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCATACACAATGG 225724 Query 23970 CCGA 23973 | || Sbjct 225725 CAGA 225728 >seq97 Length=261666 Score = 230 bits (254), Expect = 2e-55 Identities = 499/732 (68%), Gaps = 21/732 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| |||||| | |||||| Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || ||||||||| ||| ||| | || | || || ||| ||||| | || || Sbjct 3265 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 3321 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || ||||| || ||||| ||||| |||||||| ||||||| Sbjct 3322 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 3381 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || || || || | | ||||| ||||||| ||||| || || | Sbjct 3382 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 3441 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || |||||||| || ||| | ||||| ||| Sbjct 3442 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 3501 Query 57864 GACGAGA--AACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAG 57920 | || ||| || || |||||||| || || || || || || |||| |||||| Sbjct 3502 AGCCAGCGCAAC-TAT-CTCTTCAACGCCATTGAGACTATCCCTTGCATTCGC-AAGAAG 3558 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || || ||| | ||||| ||||| | | | | | || || || | || | Sbjct 3559 GCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGTT 3618 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || |||||||| ||||| ||||| ||| |||||| | || || ||| | Sbjct 3619 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTC 3678 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || || |||||||||||||| ||| ||||||| | || || || |||||| Sbjct 3679 AAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 3738 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGAC-GC 58158 ||||| || || || ||||| ||||| || |||| ||| |||| || | || | || Sbjct 3739 GGTCTGCACACCGACTTTGCCTGCCTGTTGCACTCCCAC---CTCAAGAACCGCGCCAGC 3795 Query 58159 -GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 ||| ||| ||||| |||||||| || ||| || || | ||||| | ||| Sbjct 3796 AAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACC 3855 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || ||| |||| || |||||| | |||||| ||||||| ||| Sbjct 3856 GAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCAGTACATCGAG 3915 Query 58278 TTTGTTGCCGAC 58289 |||||||| ||| Sbjct 3916 TTTGTTGCTGAC 3927 >seq1 Length=17084797 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 1761055 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1761114 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 1761115 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1761174 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || || ||||||| || Sbjct 1761175 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTAC 1761234 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 1761235 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 1761285 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| ||||| || |||||| |||| || || | || Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | ||| ||||| || | || || || || Sbjct 3412270 GATACCATCGACAATGTCAAGTCAAAGATTCA-GGATAAGGAGGGTATCCCCCCGGATCA 3412212 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| ||| ||||||| || || Sbjct 3412211 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGCGACTACAA 3412152 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || ||||| || || || Sbjct 3412151 CATTCAGAAGGAGAGCACACTTCACCTTGTCCT 3412119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| || |||||| |||| || || | || Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 3412042 GATACCATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 3411983 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| |||||||| | || ||||||| || ||| Sbjct 3411982 CAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 3411923 Query 31373 ATTCAAAAAGA 31383 || || || || Sbjct 3411922 ATCCAGAAGGA 3411912 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || || |||||| | || || || | || Sbjct 3412845 CATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATC 3412786 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| || | || || ||||| Sbjct 3412785 CGACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 3412726 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| || | || ||| ||| || ||| || || Sbjct 3412725 GCAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACTCTGTCCGACTACAA 3412666 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || |||| || Sbjct 3412665 CATCCAGAAGGAGTCTACTCTCCACTTGGTTCT 3412633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765803787440